Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00019 ATGACATCAAATATCATATTCAGATTGGAACGCCGTAGCAGGTCCAAAACTGCCATTGGACAAGCATATGTGCCTGTTAACGATATCATAGATGGTGCTCTATTTCACAAATGGGTTCAAGCCCAAAAGCCCATAGCTGGAGGTCCAATGATCTATGTGAAGCTACAATTTTCTGATGCTCAACGACATCAAAACTGGGCTCAAGGTGTCAAGGATTCTGATTTTCCTGGAGTTCCTCGTACTTTCTTCTCACAACAAAAGGGTTGCAGTCGtttgGTTACTCTTTACCAAGATGCTCATGTCCTAGATGATTTTTCTCCAAGAGTAGTGCTCGATGGAGGTAAGACTTACGAACCTCAAAGATGCTGGGAGGATATCTTTGATGCAATCAACGAAGCAAAACATTTTATATACATCACTGGTTGGTCTCTTTACACTCAGATTTCTCTGATAAGAGATCCTAAGAGGCCAAAGCATGGTGGAGACATAACACTCGGTGAGTTGCTCAAGAAAAAGGCAAAGGAAGATGGAGTCAGGGTTGTTCTGCTTCTATGGCAGGATGGAATAATTCGAGTTCCAGGAATTGGAAGCTACGCCAGAACCATGGGTACTCATGATAAAGAAACCCAAAGCTATTTCAAGGACACAAATGTCCACTGCATTTTGTGCCCACGTGACAGTGTTTTTTACACTCATCACCAAAAGATTGTGGTGGTGGATGCTAAGTTGCCAAATGGAAAGGACTCAGATCATCAAAGAAGAATTGTGAGTTTCATTGGAGGTATTGATCTCTGTAATGGAAGATATGATACTCAATTTCATTCTCTTTTTCAAACTTTAGCTGCTGAACACAGTAAAGATTTTTATCAACCAAGTATTTCTGGATCTGCAATTGAAAAGGGTGGTCCTAGGGAGCCATGGCATGATATACATTGTAAGCTTGAAGGGCCTATTGCATGGGATGTTTACTCCACCTTTGTGCAGAGATTTCGAAAACAGGGCACAGATCAGGGCATGCTTCTTTCAGAAGAAAAGCTTAAGGATTTCATCGTTGCACCATCTCAAGTAACGAACCCTGATGATGATGATGACACGTGGAATGTTCAGTTGTTCAGATCCATTGATGATACAGCTACTCTTGGTTTTCCAGAAACTGCTAAAGAAGCTTTTGAACATGGGCTTGTTAGTGGGGAGAACAAGATGATAGATCGGAGCATTCAAGATGCATACATTAATGCTATTCGGCGAGCGAAGAATTTCATATATATTGAGAACCAATATTTCATAGGAAGTGCTTTTGGGTGGAGTGTGGATAGCACAGAATTTGATGCTGTTCATCTTATCCCAAAGGAGCTTTCACTCAAAATTGTTAGCAAGATTAAGGCTAAGGAGAAGTTCATGGTGTATGTAGTGATTCCAATGTGGCCGGAGGGTGTTCCAATAAATAAGACTACTGGAACTGTTCAGAAAATACTATATTTGCAGAGGAGGACTATAGAGATGATGTACAAGGACATTGTTGAAGCACTCAAGGAAGAGAAAATTGAACAAGATCCTCGAAAATATTTGTCATTCTTCTGTCTTGGCAATCGAGAGGCGAAGAAGGACGGAGAGTATGTGCCTCCGCAGAGACCAAAACAAGGTTCCGATTACCAGAAAGCTCAAGAAGCCAGACGCTTCATGATTTATGTGCATTCCAAGATGATGATAGTTGATGACGAGTACATAATCATTGGATCTGCCAACATCAACCAGAGATCAATGGATGGTGGAAGAGACACCGAAATTGCCATGGGAGCTTATCAACCGCACCATTTGGCTACCAGCCAAGGTGGTGCAAGAGGCCAAATCCATGGCTTCCGCATGTCCCTATGGTACGAGCACCTTGGCATGCATGAAGACACCTTCCTCAACCCAGAAAGTGAAGAATGTATTAACAAAGTGAAGCAACTTGGAGACAAGTATTGGGAGTTGTATTCTAACAAGGATTTACCTGGATCTAATAACCTTCCTGGTCACTTGCTTCGATATCCTGTTGACATTTCTGCTGATGATGGAACACTCACAAATCTCTCAGGAGTTGAGTTCTTCCCTGACACTAATGCTCCTATTCTAGGTTCCAAAAACCCTACTATCATAAATCGAGTTCTTCCTAACAGGATCTTCACCATGTAA 2175 0.4175 MTSNIIFRLERRSRSKTAIGQAYVPVNDIIDGALFHKWVQAQKPIAGGPMIYVKLQFSDAQRHQNWAQGVKDSDFPGVPRTFFSQQKGCSRLVTLYQDAHVLDDFSPRVVLDGGKTYEPQRCWEDIFDAINEAKHFIYITGWSLYTQISLIRDPKRPKHGGDITLGELLKKKAKEDGVRVVLLLWQDGIIRVPGIGSYARTMGTHDKETQSYFKDTNVHCILCPRDSVFYTHHQKIVVVDAKLPNGKDSDHQRRIVSFIGGIDLCNGRYDTQFHSLFQTLAAEHSKDFYQPSISGSAIEKGGPREPWHDIHCKLEGPIAWDVYSTFVQRFRKQGTDQGMLLSEEKLKDFIVAPSQVTNPDDDDDTWNVQLFRSIDDTATLGFPETAKEAFEHGLVSGENKMIDRSIQDAYINAIRRAKNFIYIENQYFIGSAFGWSVDSTEFDAVHLIPKELSLKIVSKIKAKEKFMVYVVIPMWPEGVPINKTTGTVQKILYLQRRTIEMMYKDIVEALKEEKIEQDPRKYLSFFCLGNREAKKDGEYVPPQRPKQGSDYQKAQEARRFMIYVHSKMMIVDDEYIIIGSANINQRSMDGGRDTEIAMGAYQPHHLATSQGGARGQIHGFRMSLWYEHLGMHEDTFLNPESEECINKVKQLGDKYWELYSNKDLPGSNNLPGHLLRYPVDISADDGTLTNLSGVEFFPDTNAPILGSKNPTIINRVLPNRIFTM 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00019 724 Pfam Phospholipase D Active site motif 561 587 IPR001736 GO:0003824
Aip01g00019 724 Pfam Phospholipase D Active site motif 229 268 IPR001736 GO:0003824
Aip01g00019 724 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 560 587 IPR001736 GO:0003824
Aip01g00019 724 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 228 268 IPR001736 GO:0003824
Aip01g00019 724 Gene3D Endonuclease Chain A 366 609 - -
Aip01g00019 724 PANTHER PHOSPHOLIPASE D 3 712 IPR015679 -
Aip01g00019 724 Pfam Phospholipase D C terminal 633 708 IPR024632 -
Aip01g00019 724 SMART pld_4 228 268 IPR001736 GO:0003824
Aip01g00019 724 SMART pld_4 560 587 IPR001736 GO:0003824
Aip01g00019 724 PIRSF PLD_plant 1 717 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Aip01g00019 724 Gene3D Endonuclease Chain A 112 359 - -
Aip01g00019 724 SUPERFAMILY Phospholipase D/nuclease 394 645 - -
Aip01g00019 724 PANTHER PHOSPHOLIPASE D ALPHA 3 3 712 - -
Aip01g00019 724 SUPERFAMILY Phospholipase D/nuclease 62 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00019 Aip-Chr1 219511 224676 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00019 1 709 Phospholipase D Gene Family (Wang group) AT1G52570 60.000 0.0 890
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00019 K01115 - sind:105158388 900.968