Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00018 ATGGAACCGCAGCTGCTACATGGGACTATGGACGCAACCATTATTCTTTCGGGGTTCCAAAATATCGAGAAGCTTATCATGTATATAGAAAGCGGTGATCGTGTGGAGGACACCGGTCGTAAAGCGGACCATAGGGGATTCTATGCAGCCATTTATCTGGATGGAATGCTCATGAGAATAAGCAGGCGTATAAATATACAAGATTGTGTCAACCTAAATACTAATATCAGGTGGCAGGAGAAGTTTTACTTTCATTGTGCCCATAAGGCTCATCACATCATTTTCAGCATCCACCTTAACGAACCGCAAACTATGGGTTCAAGTGATTCAATTGCAAAAGCAAAACTGCCCGCTCGGCGGTTCATCGATGGTGGTCGATATGAAGGGACGCTTTCTCTTAATAATTTTTATCAACTTCGGATGAACGTGAAGGTGCAGTTTTCTGCTGCTACACGGCTGCAAGAAGTCACCGAAAGTAGTGTATTTGGTGAAGTTCCTCGCACGTTCTTCCGACAGAGGAACGGATGCAAGGCTACTCTTTACCAAGACGCTCATGTCCCAAATGATTTTGCTCCAAGAATATTGCTTAATGGAGTTGAGACTTACGAGGCTCAAAGATGCTGGGAGGACATGTTTGATGCAATCAATAAAGCGAAAAAGTTCATATATATTGCTGGCTGGTCTTTGGAGACTGATATAACCCTCATAAGGGATACAAGTAGTATTCTAAGTGACGAAATAAATACACGACTTGGTGAGCTGCTCCAGAGAAAGGCACAGGAACCTCAGGATGTGAAGGTCCTACTGCTTCTTTGGGAGGATCTAACAAACATTTCGTCTGGCAGTGGTGGCCACATGAAAACTTTCTGCAAAAAAACCCGAGAGTATTTTCGGGGCAGTGGTGTTCACTGTGTTTTATGCTCTCGTCCTCTTGGATACTCTCATCACCAAAAAATTGTGGTGGTGGATAGTGATTTTCCCGGTGATAATGACAGAAGAAGAATAGTGAGTTTTATTGGGGGTTTCGATCTCTCTCATGGTAGATACGATACTCCAACCCATTCACTTTTTAGAACCTTGAATGCTGAACACAGTCAAGATTTTCACCAACCCTGCTTTCCCGGCTCTTCAATAGAAAAAGGTGGTCCAAGGGAACCGTGGCATGACGTGCACTGTAAGCTTGAAGGCCCTGTTGTGAAGGATGTTTACGACACCTTTGTGGAGAGATGTATGAAGGAAGGTATTAAAGAGGGAATACTTTTTCCGAAACAAGAATTTGAAAATGTCATTGATCACTCCTGCGACGTAAAAGATGCTGACATGTGGAATGTTCAATTATTCAGATCTATTGATGATTCAACTACTTGTGGGTTACCAAACACTCCTGAAGGTTTTGCCGGAGCTGGTCTTGTTAGAAGGAACGGTAGAATCATAGATCGTAGCATTCAAGATGCCTATATTGATGCTATTAGGCGTGCAGAAAGATTCATTTATATTGAGAATCAGTATTTTGTAGGAAGTGGTTTTGACTGGAAAGATGACTATGGCAACAAAATTGATCACGTGGATTGTTTGAATCTCATTCCAAAGGAGATTTCACTTAAAATTGTTAGCAAGATTAAAGCTAAGCAAGACTTCGCTGTGTATGTTGTGGTTCCAATGTGGCCAGAGCCTTCCCCATATGATTCTTATGTTAAGCGAATTTTGTATTACCAGAGGAGGACAATGGAGATGATGTACAAGGACATTACTCAAGCACTCAATAGGGAGAACAAAACTGAAGAAGATCTTAAAAGATATTTGTCTTTCTTCTGTCTTGGAAACCGAGAGAAGGAGGATGAGAGGAAAGAAGAGGAGGAGCAGAAGGCAGAGACCGATGATGATGATNNACGAGGAGAAGGCAGAGACCGAGGAGGAGATGAAGGATGA 1929 0.4235 MEPQLLHGTMDATIILSGFQNIEKLIMYIESGDRVEDTGRKADHRGFYAAIYLDGMLMRISRRINIQDCVNLNTNIRWQEKFYFHCAHKAHHIIFSIHLNEPQTMGSSDSIAKAKLPARRFIDGGRYEGTLSLNNFYQLRMNVKVQFSAATRLQEVTESSVFGEVPRTFFRQRNGCKATLYQDAHVPNDFAPRILLNGVETYEAQRCWEDMFDAINKAKKFIYIAGWSLETDITLIRDTSSILSDEINTRLGELLQRKAQEPQDVKVLLLLWEDLTNISSGSGGHMKTFCKKTREYFRGSGVHCVLCSRPLGYSHHQKIVVVDSDFPGDNDRRRIVSFIGGFDLSHGRYDTPTHSLFRTLNAEHSQDFHQPCFPGSSIEKGGPREPWHDVHCKLEGPVVKDVYDTFVERCMKEGIKEGILFPKQEFENVIDHSCDVKDADMWNVQLFRSIDDSTTCGLPNTPEGFAGAGLVRRNGRIIDRSIQDAYIDAIRRAERFIYIENQYFVGSGFDWKDDYGNKIDHVDCLNLIPKEISLKIVSKIKAKQDFAVYVVVPMWPEPSPYDSYVKRILYYQRRTMEMMYKDITQALNRENKTEEDLKRYLSFFCLGNREKEDERKEEEEQKAETDDDDXRGEGRDRGGDEG 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00018 642 Coils Coil 608 628 - -
Aip01g00018 642 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 311 348 IPR001736 GO:0003824
Aip01g00018 642 Pfam Phospholipase D Active site motif 312 348 IPR001736 GO:0003824
Aip01g00018 642 Gene3D Endonuclease Chain A 435 623 - -
Aip01g00018 642 MobiDBLite consensus disorder prediction 627 642 - -
Aip01g00018 642 SUPERFAMILY Phospholipase D/nuclease 161 411 - -
Aip01g00018 642 SUPERFAMILY Phospholipase D/nuclease 479 581 - -
Aip01g00018 642 MobiDBLite consensus disorder prediction 612 642 - -
Aip01g00018 642 Gene3D Endonuclease Chain A 196 419 - -
Aip01g00018 642 PANTHER PHOSPHOLIPASE D 4 632 IPR015679 -
Aip01g00018 642 PANTHER PHOSPHOLIPASE D ALPHA 3 4 632 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00018 Aip-Chr1 214714 217199 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00018 1 633 Phospholipase D Gene Family (Wang group) AT3G15730 45.536 2.83e-179 527
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00018 K01115 - ming:122092433 523.087