Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00011 ATGTCTCCATCGTCAGAGTCTTCAGGTTCCTCTCGTTCTTCCTTCTCATCGTCTTCGACTTCAAACAAAAGCAGCAGCAGTATGTCCATGGAACATACGTTGATGCAAACCCACCATACTCATCCTCTTCCTCCACCTCCTCCGCCTCCGGTTGTCACTACTCTCAGCTTGAGTTTTGCTGGTGTTCCACTCACTAACGTGCAGCCTCATCTGCAAAACCAGCAAATCTCTGCTAATAACAACGAACTTCTTCCCCGTTTTGATTCTTTGTCCTCTCTTCTTCGGAGAAAGAGGATCTGTGAAAACATATCAAAACGCATGATGAAGAATCGTGAATCTGCTGCTAGATCAAGGGCTAGGAAACAGGCTTATACACATGAGCTGCAACAAAAAGTTAAAGAGTTAATAGCAGAGAACAATAGACTCAGAAGACAGAACCAACAGCAAATAGTTGAAATGGGTTCCAAGCAGGATCCAAATGAGAAAAAGGGCAAAAATAAGCTTCGCAGAAGTGGTAGTATTTAG 525 0.4362 MSPSSESSGSSRSSFSSSSTSNKSSSSMSMEHTLMQTHHTHPLPPPPPPPVVTTLSLSFAGVPLTNVQPHLQNQQISANNNELLPRFDSLSSLLRRKRICENISKRMMKNRESAARSRARKQAYTHELQQKVKELIAENNRLRRQNQQQIVEMGSKQDPNEKKGKNKLRRSGSI 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00011 174 SMART brlzneu 91 162 IPR004827 GO:0003700|GO:0006355
Aip01g00011 174 Coils Coil 125 152 - -
Aip01g00011 174 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 41 153 IPR043452 GO:0003700|GO:0045893
Aip01g00011 174 MobiDBLite consensus disorder prediction 136 174 - -
Aip01g00011 174 MobiDBLite consensus disorder prediction 141 155 - -
Aip01g00011 174 Pfam bZIP transcription factor 105 148 IPR004827 GO:0003700|GO:0006355
Aip01g00011 174 PANTHER PROTEIN FD-LIKE 41 153 - -
Aip01g00011 174 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 105 145 IPR004827 GO:0003700|GO:0006355
Aip01g00011 174 CDD bZIP_plant_BZIP46 105 149 - -
Aip01g00011 174 MobiDBLite consensus disorder prediction 1 51 - -
Aip01g00011 174 MobiDBLite consensus disorder prediction 1 36 - -
Aip01g00011 174 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 105 120 IPR004827 GO:0003700|GO:0006355
Aip01g00011 174 SUPERFAMILY Leucine zipper domain 105 149 IPR046347 GO:0003700|GO:0006355
Aip01g00011 174 Gene3D - 103 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00011 Aip-Chr1 157866 162645 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00011 41 147 bZIP Transcription Factor Family AT3G56850 40.741 4.73e-14 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Aip01g00011 bZIP_1 1.1e-13 CL0018