Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00003 ATGGTGGAGAACCCATCACCAATGGGAAACGCAACAAATCACATGATGCTGGGATTTCTTGCTGGAATTTCGACAGTTATGTTAGTTGCTGTCATATTGTTCTGCCTCTTTGGAACAAAGCTCACTGCACTTTTCAAACAACATAGGACTTTGAAAGGTAAAGAGTACAAAAGCTTCAAAGATGAAACAATGCCGCTAAGGCGTTTTACCTTTGATGAAATAGAGAGAGCTACCAAGAACTTTAGCCAAGAATTCTTACTTGGTTCTGGTGCATTTGGAAATGTTTACAAAGGAAATTTTGAATTAGAAGGAACTTTAGCCATTAAGAGAGCTCACGGTGAATCCTTCTTAAGCGTCGATGAATTCCGAAATGAAATTAGGCTCCTTGCAACTGTAAAGCACAGAAATCTTATTGGTCTAGTGGGGTATTGTGAAGAACCAGAAAGATTTGGGGCAAGAATTCTGGTATATGAATATGTACCAAATGGCTCTCTGCTTGAATATATGATTGGAAACAAGAATAGCTTGACTTGGAAGCAAAGAGTGAACATAGCAATAGGAGCAGCTAGAGGCATAGCTTATTTACATGAAGGAATAAAGCCGAGTATAATTCATCGTGATCTTAAACCAAGTAACATCCTATTAGGGGAAGGTTTCGAGGCTAAGGTCTCGGATTTCGGGTTGGTGAAATCCGGCCCTATCAAGGACCAATCGCATGTGAGTAGCCAAATCAAAGGGACACCAGGGTATCTTGATCCGGCATATTGTTCAAGCTTTCACGTGACAAAATTCACTGATGTTTATAGCTTTGGTGTCATACTTCTTCAACTTGTTTCAGCTAGACCTGCTGTTGATACAAATGAGGTACAAAGCAAGCAACATATAATTGATTGGGCAAGCCCTAGCTTAGAGAAGGGTAATGTTGAAGAAATCATAGATGCAAACTTGCTATGTCAAAGTGAGCCATGCAATATGAGAGTTATGCTGAAGATGGGTCAACTTGCTTTAAGATGTGTGGTTCAAGAACCAAAAAGTAGACCTACAATGATTCAAGTGTGTCAAGAACTAGAACAAGCACTATACTCTGAAGATACCTTCAACAACAAGCAACATTCTTCAAAGGGTTTCCCTAAATCAATTGGATTGTCTCAGCAATCATCAGTGGAAAAGAATGATAGCTTTGTGAGCATAGATGGTGTTGGACTTCAGAAATTCCATATTGATATGGATAGCTTATCATTTCAGAGCACAAGGTTAATGTGCCTAGAAAATAATAGTATAAGTATTGACATTGATAACAACAACTTGAAGAGAATTCAAGAGGATGGGGACATATAA 1338 0.3879 MVENPSPMGNATNHMMLGFLAGISTVMLVAVILFCLFGTKLTALFKQHRTLKGKEYKSFKDETMPLRRFTFDEIERATKNFSQEFLLGSGAFGNVYKGNFELEGTLAIKRAHGESFLSVDEFRNEIRLLATVKHRNLIGLVGYCEEPERFGARILVYEYVPNGSLLEYMIGNKNSLTWKQRVNIAIGAARGIAYLHEGIKPSIIHRDLKPSNILLGEGFEAKVSDFGLVKSGPIKDQSHVSSQIKGTPGYLDPAYCSSFHVTKFTDVYSFGVILLQLVSARPAVDTNEVQSKQHIIDWASPSLEKGNVEEIIDANLLCQSEPCNMRVMLKMGQLALRCVVQEPKSRPTMIQVCQELEQALYSEDTFNNKQHSSKGFPKSIGLSQQSSVEKNDSFVSIDGVGLQKFHIDMDSLSFQSTRLMCLENNSISIDIDNNNLKRIQEDGDI 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00003 445 Pfam Protein kinase domain 84 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip01g00003 445 Gene3D Transferase(Phosphotransferase) domain 1 160 379 - -
Aip01g00003 445 PANTHER OS01G0750732 PROTEIN 13 395 - -
Aip01g00003 445 CDD STKc_IRAK 87 358 - -
Aip01g00003 445 Gene3D Phosphorylase Kinase; domain 1 41 159 - -
Aip01g00003 445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Aip01g00003 445 ProSitePatterns Protein kinases ATP-binding region signature. 87 109 IPR017441 GO:0005524
Aip01g00003 445 SUPERFAMILY Protein kinase-like (PK-like) 59 357 IPR011009 -
Aip01g00003 445 SMART serkin_6 81 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip01g00003 445 ProSiteProfiles Protein kinase domain profile. 81 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00003 Aip-Chr1 93855 98259 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00003 67 395 Receptor kinase-like Gene Family AT1G30570 42.598 6.89e-77 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Aip01g00003 Pkinase 4.6e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00003 - - gmx:106794267 625.935