Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00002 ATGCGCATCGCAATTCCAACGACGACGACGACTTCCATGGCCGGCGACGAGAGACAAACTTCTTACCGTGTTCTGGCGGATCGGTGTCGGACACTGGAGGAGGAACAAGCCAAGCTCAGGGAACAGTTCCGCCAACTCTTGCAGGAGAAGGAAGAGGAAGAAGAAGAAGTGGTGGTTGCAGATTCAACGCTGCGTTTTCTTTCGGGGAACTTCTTCTCGGATAGTCCGTACGCTAGCGTGTTGAAATGCATGGGACACGCCGTTCATGTCTACAGAGCTTCCTCCGGTGAGATCATATATTGGAATCGTTCAGCAGAAACACTGTATGGATGGAAAGACTATGAAATCATTGGTCAAAGAGTTGCTAAGTTCCTTGTTACCGAAGAGTGTTATGAATCTCTGCAGAATATTCTAGAAAGATTGATCACAGGAGTTCCATGGTCTGGAAAGTTTCCTTTCAAGAAGAGATCTGGTGAAGTATTCGTAGCAATAGTGACTAAAACTCCTCTTTATGAGGATGGCGAGCTTGTTGGTATTATCACTGTTTCTAGTGATGCCGCTGTATTTAACTCAATGGATTCAGAAAATAGAAGAAGTTACCAACCTGGTAACAATGGCAAAGCTGGAGGACAGAGGATAAATTTCAAAAGAATTCAGTGGCCTCCACGACCGTTGATTGCATCATCTGTCTCTAATCTGGCATCAAAGATTCTCCTAAATCGGCATCCGGATGATGCATTTTCCAGGAATCCTACAACAGATGGAGATGAAGAAAAACACAGCATTCATGAAACAGAACGTCATTCTAGTCATCAGAGAAGTGAAAACATAACTTTTAGGGAGGCGTCCGAGAAGGTTAAGTCTACTATTGCAGCCAGAGTCCTAGCCAAGCTACAAACAGGGGGAAGTGAAAAATGTGGGAAGGATGATGGAAGCATTAAAAGTAATTGCACGAATGATTGTTCCGGAAGTAAGAGAGTGAATAATGAGGGTGATTCTTCTGGAGGCTCAGTAGCTTTAACTCCACGCAAGGATGGTGCTAATGAAGAGGATAGAGAAGACCCATTGTTAAGATTACACTGCAAATTTAATCCAAAGAAAAAGGAACAAGAAGCTATAAATATGGTGATAGAAGATGAAATGAAAAAGCAACAAGAAGGACTGCAATTGCAAAGTACACGAGAAAGCACTGGCAGTAATGGAGGCAGTAATGGAAGTTCATCCAGTAAGGGTGACAATGAGTCAAACTCTATTGTGAAGTCTGAAATCCATTGGGAAAACCTTCAATTAAGAGAGGAGATTGGTCAAGGGTCTTACGCAGTTGTGTATCACGGAATATGGAATGGATCGGATGTTGCTGTCAAGGTTTACTTTGGGAATGGATACACAGAGGAGACCTTACATGACTACAAAAAAGAGATTGATATAATGAAGAGACTAAGACACCCTAATGTATTACTTTTCATGGGAGCAGTATATTCGCAGGAAAGGCTTGCCATTGTAACAGAACTATTACCTAGGGGAAGCCTTTTCAAAATTCTTCACAGGAGTAATCAGCCACTAGATATCAGAAGGCTTTTAAGGATGGCTCTTGATGTTGTGCGTTTCCTCTCTCTCTCAAACACCACATTCATAAACGGATATTAA 1647 0.4244 MRIAIPTTTTTSMAGDERQTSYRVLADRCRTLEEEQAKLREQFRQLLQEKEEEEEEVVVADSTLRFLSGNFFSDSPYASVLKCMGHAVHVYRASSGEIIYWNRSAETLYGWKDYEIIGQRVAKFLVTEECYESLQNILERLITGVPWSGKFPFKKRSGEVFVAIVTKTPLYEDGELVGIITVSSDAAVFNSMDSENRRSYQPGNNGKAGGQRINFKRIQWPPRPLIASSVSNLASKILLNRHPDDAFSRNPTTDGDEEKHSIHETERHSSHQRSENITFREASEKVKSTIAARVLAKLQTGGSEKCGKDDGSIKSNCTNDCSGSKRVNNEGDSSGGSVALTPRKDGANEEDREDPLLRLHCKFNPKKKEQEAINMVIEDEMKKQQEGLQLQSTRESTGSNGGSNGSSSSKGDNESNSIVKSEIHWENLQLREEIGQGSYAVVYHGIWNGSDVAVKVYFGNGYTEETLHDYKKEIDIMKRLRHPNVLLFMGAVYSQERLAIVTELLPRGSLFKILHRSNQPLDIRRLLRMALDVVRFLSLSNTTFINGY 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00002 548 Pfam PAS domain 94 185 IPR000014 -
Aip01g00002 548 MobiDBLite consensus disorder prediction 300 356 - -
Aip01g00002 548 MobiDBLite consensus disorder prediction 312 336 - -
Aip01g00002 548 MobiDBLite consensus disorder prediction 386 416 - -
Aip01g00002 548 Pfam Protein tyrosine and serine/threonine kinase 428 534 IPR001245 GO:0004672|GO:0006468
Aip01g00002 548 MobiDBLite consensus disorder prediction 247 282 - -
Aip01g00002 548 ProSitePatterns Protein kinases ATP-binding region signature. 434 455 IPR017441 GO:0005524
Aip01g00002 548 Gene3D Phosphorylase Kinase; domain 1 421 505 - -
Aip01g00002 548 ProSiteProfiles PAS repeat profile. 95 145 IPR000014 -
Aip01g00002 548 SUPERFAMILY PYP-like sensor domain (PAS domain) 78 185 IPR035965 -
Aip01g00002 548 Coils Coil 22 63 - -
Aip01g00002 548 MobiDBLite consensus disorder prediction 243 282 - -
Aip01g00002 548 PANTHER SERINE-THREONINE PROTEIN KINASE 25 535 - -
Aip01g00002 548 CDD PAS 96 185 IPR000014 -
Aip01g00002 548 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 53-RELATED 25 535 - -
Aip01g00002 548 Gene3D PAS domain 90 188 - -
Aip01g00002 548 ProSiteProfiles Protein kinase domain profile. 428 548 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip01g00002 548 MobiDBLite consensus disorder prediction 383 416 - -
Aip01g00002 548 SUPERFAMILY Protein kinase-like (PK-like) 414 535 IPR011009 -
Aip01g00002 548 TIGRFAM sensory_box: PAS domain S-box protein 94 185 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00002 Aip-Chr1 86999 91682 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00002 13 535 MAP Kinase Kinase Kinase AT4G23050 38.526 6.63e-107 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Aip01g00002 PK_Tyr_Ser-Thr 1.3e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00002 - - gmx:100813707 631.713