Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00001 ATGGAGTTTGTGGCAGAAAATCCAAGTCCTTTGTTGGGTTCCTTTGTGGAGAGAGTGAACATGGTTGGTAGCCATGCCCTCTCTGCCATTGTTAGGAACATCTTCTCTGCCATCTTCACCTTCTGCTTTGCATTAGTGGGGACTTTGTTGGGGGCTATGACTGGAGCTTTGATAGGACAAGAGACAGAGAGTGGATTCATTAGAGGAGCTGCCATTGGAGCCATTTCAGGAGCTGTTTTTTCCATTGAAGTTTTTGAATCTTCTCTTGTTCTTTGGCAATCTGATGAATCTGGAATTGGCTGCTTCTTATACTTGCTTGATGTAATTGCAAGCCTATTAAGTGGAAGACTTGTGAGAGAAAGGATTGGTCCAGCAATGTTAAGTGCTGTCCAAAGTCAGATGGGTGCTGTTGAGATTAACTTTGATGATGTTCAAAACATATTTGACACTGGTGGTGCAAAAGGCTTATCAAAAGATTCAGTTGAAAAGATCTCAAAGATCATAATTACAAGTGACAACAGTGTTGATGCTTCTGGTGAAAAGGTTTCTTGCTCAGTTTGCCTTCAGGACTTTCAAATTGGAGAAACAGTTAGAAGCTTGCCCCATTGCCATCATATGTTTCACCTACCTTGCATTGACAAGTGGCTCATAAGGCATGGATCTTGCCCTCTATGTAGAAGGGATCTGTAA 690 0.4203 MEFVAENPSPLLGSFVERVNMVGSHALSAIVRNIFSAIFTFCFALVGTLLGAMTGALIGQETESGFIRGAAIGAISGAVFSIEVFESSLVLWQSDESGIGCFLYLLDVIASLLSGRLVRERIGPAMLSAVQSQMGAVEINFDDVQNIFDTGGAKGLSKDSVEKISKIIITSDNSVDASGEKVSCSVCLQDFQIGETVRSLPHCHHMFHLPCIDKWLIRHGSCPLCRRDL 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00001 229 CDD RING-H2_PA-TM-RING 184 226 - -
Aip01g00001 229 SUPERFAMILY RING/U-box 183 229 - -
Aip01g00001 229 ProSiteProfiles Zinc finger RING-type profile. 184 226 IPR001841 -
Aip01g00001 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 229 IPR013083 -
Aip01g00001 229 SMART ring_2 184 225 IPR001841 -
Aip01g00001 229 PANTHER RING/U-BOX SUPERFAMILY PROTEIN-RELATED 13 229 - -
Aip01g00001 229 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 13 229 IPR044523 -
Aip01g00001 229 Pfam Ring finger domain 183 226 IPR001841 -
Aip01g00001 229 Pfam YMGG-like Gly-zipper 43 79 IPR027367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00001 Aip-Chr1 67097 76719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00001 9 229 C3H Transcription Factor Family AT5G66070 75.566 1.32e-116 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00001 - - gmx:100816939 379.022