Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy9g3007 ATGTATATCATGACCCATTTCATTGTGGTCGACAAGAAGGAAAAAACCAAGACAACCAACAATAGATGGTCCTTAAGTTTTTCACATAGGACCACGGTTCAGCCAGTTTCTAAACCAAGCTATCCTCTTGAAGCATTTAGCTTTAAGCCCATTCCGGAGTTGCTTGATGCTGACAAGCTGGAAGATTCAGTTCTAATCGATGTCATAGGGGAAGTGGTTGGCAAAGAGGATCCAAGAGAACTCATAACTAGCAAAGGAAGAGAGACTAAAAGATTGGCTGTCATTCTTGAGGACCTTGAAAACAATAGTATTGGTTGTGTGTTGTTTGGAGACATGGTTGATCAGATACTTCCATATCTTGAAGAAGGGAGGGTTGAGCCATTGATAGTTATAGCACAGTTTTTTAAACCCAGCAGGTGGAACGGAAAAACGTCAGTGCAGAGTCATTTTGATGTCTCAAAGTTACGTATTAACCCTGATTTGGATGAGGTCAAAGATTTTCGTAACAGGAGGCTTTCTGAAAAGCCGTCTAACTCGACCAGGATAAGTCAAGTTACATCGCATGGTCCACGATCTGGTGCAGACGAAATAAAAAATGGAGACGTCGTGGTCAAGACAATAGAAGAAGCCCTGAGCTCTTCACAGGAAGGACCTATATGGATTGCTGGTACTATTGTTTCAATTAATGCTGGAAAGGATGATTGGTTCTATAAATCGTGTCGAAAGTGTCCGAAGAAAGTAGAAACTCCAATTGGCAACAGATATGAGTGTGGCAAGTGTGGCCACACTCATGCAAGTGCATCACTTAGGTTTAAGGTTGAGGTATTAGTATATGATGGAACTGGGAGCATCATGTTGCTGATGTGGGATAGGGAGACGGCGCAGCTGTGTGGGAGGCAAGCTGAGCAGATCAAGGATGAGGAAAGTAGTGATGGAGAAGGTTATCCTCCTACATTGGATAGCATGATGGATAGGCGGTTACTCTTCAAAATAAATGTCAAAGCATCGAACATGAAGCAATATGACCATGTTTACACAGTGATGAAAATATGTGATGATGAAGATATTGTGGAGATGAATCACCCCAAACCAGTACAAAACAATGCTTCTGCTAATCTAATTGAGACCGGGTGCAGTGACTCGATTGGTATATCAGCAGTGGTGGTTAATATGCATAATGATACTGAATCTATGGTTTCTTTGGATGGTGTCGAAGACAGTGTCACAAGCCTGAAGTCCAAAACACCTGCAAAAAGAGCTCCCATGGGGCTGAAGCAGTCCGTGCATGTTAATATTGACACTGAAGATGAGTTTGGTTTTTCAACAAACAAATTTAGCCGAAAAACAGGAAAGAGGCAGAGGATTCAAATAAATGAGAGTGATAACTGA 1389 0.4183 MYIMTHFIVVDKKEKTKTTNNRWSLSFSHRTTVQPVSKPSYPLEAFSFKPIPELLDADKLEDSVLIDVIGEVVGKEDPRELITSKGRETKRLAVILEDLENNSIGCVLFGDMVDQILPYLEEGRVEPLIVIAQFFKPSRWNGKTSVQSHFDVSKLRINPDLDEVKDFRNRRLSEKPSNSTRISQVTSHGPRSGADEIKNGDVVVKTIEEALSSSQEGPIWIAGTIVSINAGKDDWFYKSCRKCPKKVETPIGNRYECGKCGHTHASASLRFKVEVLVYDGTGSIMLLMWDRETAQLCGRQAEQIKDEESSDGEGYPPTLDSMMDRRLLFKINVKASNMKQYDHVYTVMKICDDEDIVEMNHPKPVQNNASANLIETGCSDSIGISAVVVNMHNDTESMVSLDGVEDSVTSLKSKTPAKRAPMGLKQSVHVNIDTEDEFGFSTNKFSRKTGKRQRIQINESDN* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy9g3007 462 PANTHER REPLICATION FACTOR A 1, RFA1 30 419 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ahy9g3007 462 CDD RPA1_DBD_C 204 350 IPR013955 -
Ahy9g3007 462 MobiDBLite consensus disorder prediction 172 193 - -
Ahy9g3007 462 Gene3D - 41 181 IPR012340 -
Ahy9g3007 462 PANTHER BNAC07G49340D PROTEIN 30 419 - -
Ahy9g3007 462 SUPERFAMILY Nucleic acid-binding proteins 46 171 IPR012340 -
Ahy9g3007 462 MobiDBLite consensus disorder prediction 176 190 - -
Ahy9g3007 462 CDD RPA1_DBD_B_like 67 171 - -
Ahy9g3007 462 Pfam Replication factor-A C terminal domain 223 350 IPR013955 -
Ahy9g3007 462 Gene3D - 187 360 IPR012340 -
Ahy9g3007 462 SUPERFAMILY Nucleic acid-binding proteins 205 354 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy9g3007 Ahy-Chr9 119819997 119823097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy9g3007 21 304 Core DNA Replication Machinery Family AT2G06510 27.181 1.42e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy9g3007 - - aip:107630584 658.292