Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy9g2943 ATGGACAGAACCAGAACACCAATACAAACATGCTTAGATTCTCAACTATGGCACGCCTGCGCAGGCCCCATGGTTCAAATGCCACCTCTCAACACCAAAGTCTTGTACTTCCCACAAGGCCATGCTGAACACCAACAAGCCCATGCCCATGGTCGAAAACCCCATTTTGCCCCTGCCATGAAAACCCCCATTCCACCCTTCTTCCCTTGCACACTCACCGCCATCAAATACATGGCAGAACCTGAAACCGACGAGGTCTATGTCAAGATCACCCTCACCCCTCTCCTCTCAGACCCAGAAGAACACGATCATCATTGTAGTAGTAATCATAATAGTTTCTTGGACAATAATGGTGAAAAGCCTGCTTCTTTTGCAAAGACTCTAACACAATCCGATGCCAACAATGGCGGCGGTTTCTCTGTGCCTCGTTACTGCGCCGAAACCATTTTCCCAAGGCTTGATTACTCCGCAGAGCCTCCGGTTCAGACCATAATCGCAAAAGACGTGCATGGGCAGTGTTGGAAGTTCAGACACATTTATAGAGGCACGCCAAGGAGGCACCTTTTGACTACTGGTTGGAGCAATTTCGTTAACCACAAGAAGCTTGTTGCCGGTGACTCCATTGTTTTCCTCCGAGCCCAAAATGGTGACCTTTGTGTTGGGATTAGGAGGGCCAAGAAGGGTGGCATTGCTGCTGGAACCGCCACAAATACTAATATTACTACGAATAATAATGTTGGTGAGGCTGTGAATTGTGCTGTGAATGGAAGGCCATTTGAGGTGGTGTATTATCCAAGAGGAAGCTCACCAGAGTTTTGTGTGAAGGCTTCTTCAGTGAGAGCTTCAATGCAGATTCAATGGTGTTCTGGTATGAGATTCAAGATGCCCTTTGAGACTGAAGACTCTTCCAGAATCAGTTGGTTCATGGGGACTATTTCTTCTGTCCAGCTTTCAGATCCTCTTCATTGGCCTCATTCTCCTTGGCGTCTTCTTCAGGTGGTATGGGATGAACCAGATCTACTCCAAAATGTGAAGTGTGTGAATCCTTGGTTAGTTGAACTAGTCTCAAATGTGCCAAACTTTCATCTCTCTCCATTCTCACCACCAAGGAAGAAACAAAGGTTCCTACAAGACCAACCAGATTTTCAACTCATCAACCAGATTCCAATTCCATCATCATTCTCCACCATTCAAGATCTTCAAGGCATACAGGGAGCCAGGCATGCCCATCAATTTGGGCTCGCTCCGCAAGATTTCCACATTCTTGATGGATTTCCAAGGCTTGATCATGCAGCACAACAGCCTCATAGGCCTAGTTTTGGAATCTACAACAAGAACAACTCTGCCACCACCAAGAACAATAACAATCTTGAGATATCTTGCTTGTTGAGTGTGGGAAATCCTGGCCAGAGTTTCACTAAGGAGGAGTCTTGTTCCAATGAAACAAAAGCACCACACATTTTGTTGTTTGGGAAGCTCATTCACACTGATCAGCAGAACAATTCATCAAACAGTTCAAATAGTGTTTATGAAGGAACTAATTCATCACTCAAGACATCAATTGAAAACTCTTCTGATGATGATGGAGGGTCTCCCTGGTTCAAAAATCAGCACAAGAATAATGATCTTGTTGGAACTGAAAACATTAACATATTGTGTATGGCCTTATAA 1671 0.4488 MDRTRTPIQTCLDSQLWHACAGPMVQMPPLNTKVLYFPQGHAEHQQAHAHGRKPHFAPAMKTPIPPFFPCTLTAIKYMAEPETDEVYVKITLTPLLSDPEEHDHHCSSNHNSFLDNNGEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTIIAKDVHGQCWKFRHIYRGTPRRHLLTTGWSNFVNHKKLVAGDSIVFLRAQNGDLCVGIRRAKKGGIAAGTATNTNITTNNNVGEAVNCAVNGRPFEVVYYPRGSSPEFCVKASSVRASMQIQWCSGMRFKMPFETEDSSRISWFMGTISSVQLSDPLHWPHSPWRLLQVVWDEPDLLQNVKCVNPWLVELVSNVPNFHLSPFSPPRKKQRFLQDQPDFQLINQIPIPSSFSTIQDLQGIQGARHAHQFGLAPQDFHILDGFPRLDHAAQQPHRPSFGIYNKNNSATTKNNNNLEISCLLSVGNPGQSFTKEESCSNETKAPHILLFGKLIHTDQQNNSSNSSNSVYEGTNSSLKTSIENSSDDDGGSPWFKNQHKNNDLVGTENINILCMAL* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy9g2943 556 PANTHER AUXIN RESPONSE FACTOR 16 241 530 - -
Ahy9g2943 556 PANTHER AUXIN RESPONSE FACTOR 16 9 234 - -
Ahy9g2943 556 CDD B3_DNA 123 224 IPR003340 GO:0003677
Ahy9g2943 556 SMART B3_2 124 226 IPR003340 GO:0003677
Ahy9g2943 556 Pfam B3 DNA binding domain 124 225 IPR003340 GO:0003677
Ahy9g2943 556 MobiDBLite consensus disorder prediction 498 540 - -
Ahy9g2943 556 Pfam Auxin response factor 249 332 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Ahy9g2943 556 SUPERFAMILY DNA-binding pseudobarrel domain 110 224 IPR015300 -
Ahy9g2943 556 Gene3D - 286 360 - -
Ahy9g2943 556 Gene3D - 122 226 IPR015300 -
Ahy9g2943 556 ProSiteProfiles B3 DNA-binding domain profile. 124 226 IPR003340 GO:0003677
Ahy9g2943 556 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 241 530 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ahy9g2943 556 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 234 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy9g2943 Ahy-Chr9 118836832 118839196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy9g2943 1 543 B3 DNA Binding Superfamily AT4G30080 52.000 0.0 545
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Ahy9g2943 B3 3.40E-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy9g2943 - - gmx:100803053 692.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g2621 19 146576428 146578926 Ahy9g2943 9 118836832 118839196 hybridization