Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ahy9g2849 | ATGGCCTCCTCCCAGCATCGCTGCGTTTTCGTTGGCAATATACCATATGATGCCACAGAGGAACAGCTTATTGAAATCTGCCAGGAGGTTGGTCCTGTAGTCTCATTCAGATTAGTTATTGATAGAGAAACTGGGAAGCCAAAGGGTTATGGGTTCTGTGAGTATAAGGATGAAGAGACAGCTTTGAGTGCTCGGCGGAATCTTCAGGGTTATGAAATTAACGGGCGGCAATTGCGTGTTGATTTTGCTGAAAATGATAAAGGGAATGATAGAAATAGAGAGCAGGGTCGTGGAGGGCCTGGACTGTCAGCAAATGTTGACCCTCAGAAACATGTAGGAAGCAGCTCAGTTATCCAAGGGGATGCTGCTCATCATCAACCTATTGGTCTCCATATCGCCATAACAGCTGCGTCTGTCATGACAGCAGCTCTAGGCGGTGCTCAGTTTGGCGTCCAGTCGGCTCAAAATGGTTTGCAGAGTCAATCAGCATTGGCACATGATCCGTTAACTCTGCACCTTGCTAAAATGTCAAGGAATCAGTTAAATGAGATAATCTCTGAGGTCAAGGCAATGGCTACACAGAATAAGGACATGGCTCGGCAACTGTTGCTTTCAAGACCACAGTTGCCAAAGGCTCTTTTTCAGGCTCAGATAATGCTAGGAATGGTGACCTCCCAAGTGTTACAAATGCCAAACCTTAGGATGGTTTCAGAGCAGGCCTCACAATCTTCAGTAAATGAAGGCCAGCTAGGTCAGCCGGCATTAGTTCAGACTCTGTCTGGCCTACCCCAGAGCTTGGGACAGAGTACATTGCAGCCTGGTTTGACACCTTATGTTCAAGAAGGTCAAGCGAACGTCATGCCCCATAATCCTTTGGTTCCTAATCAATTGAATGCACATCCAAGGCCTCCGTTGCAGCCTAGAGTGCCACTTCAACAACATTCAATCAACCATGTTGGACAGTTGGGAACGCTGTCAGGGCAGTCAAATTTAATGCCTCCTTCAGCACGACCCCAGTCATTGGGGGGTTTGTCTATGAGGCCCTCAGTTCAATCTTCAACGTCGACTGCCCCGAACCAGCAAAGGCATGCCCCTTTGCCACCACATTCAGCACTTGTTGGAAGCTCAACTGTAGGACATAATATTCAAATGGTTCGACCAGATGCAAGCTTTCAGCCTAGCCCCTCTGTATCATCAGGAATTCCTCACTTAATTAGTAAGGAAGGTGATAGATCTGCATATTCAAACATGCCTTTGGGAGTAGAGAAAACAAATATGGTTCATGGTTTGTCTGAATCGTTGGGTCGCCCTTCAAAGCTCATGAAATTGGATGACGGAAGGAGTACGCCTTTTCCTTTTCCGGATGTGCCTGTGACCAATGGTTCATCCCACATTCTTGGAAGCAACTCGTTGCCTGCTCTTGCAGCTCCTAAAACAGAAGTGCCTGCTCAGCTTCCAGCAGATGTAGAGTCTGCTTTACTGCAACAAGTGTTGAATCTAACACCGGAGCAATTGAGTTCGCTGCCGCCAGAGCAGCAACAACAGGTCATTCAGCTCCAGCAGGCTCTACGGCGAGATCAGATGCAGTCCTCATAG | 1596 | 0.4762 | MASSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGNDRNREQGRGGPGLSANVDPQKHVGSSSVIQGDAAHHQPIGLHIAITAASVMTAALGGAQFGVQSAQNGLQSQSALAHDPLTLHLAKMSRNQLNEIISEVKAMATQNKDMARQLLLSRPQLPKALFQAQIMLGMVTSQVLQMPNLRMVSEQASQSSVNEGQLGQPALVQTLSGLPQSLGQSTLQPGLTPYVQEGQANVMPHNPLVPNQLNAHPRPPLQPRVPLQQHSINHVGQLGTLSGQSNLMPPSARPQSLGGLSMRPSVQSSTSTAPNQQRHAPLPPHSALVGSSTVGHNIQMVRPDASFQPSPSVSSGIPHLISKEGDRSAYSNMPLGVEKTNMVHGLSESLGRPSKLMKLDDGRSTPFPFPDVPVTNGSSHILGSNSLPALAAPKTEVPAQLPADVESALLQQVLNLTPEQLSSLPPEQQQQVIQLQQALRRDQMQSS* | 532 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ahy9g2849 | 531 | MobiDBLite | consensus disorder prediction | 290 | 309 | - | - | |
Ahy9g2849 | 531 | Pfam | Transcription termination and cleavage factor C-terminal | 492 | 525 | IPR026896 | GO:0031124 | |
Ahy9g2849 | 531 | CDD | RRM_CSTF2_CSTF2T | 9 | 83 | - | - | |
Ahy9g2849 | 531 | SMART | rrm1_1 | 8 | 81 | IPR000504 | GO:0003723 | |
Ahy9g2849 | 531 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 7 | 85 | IPR000504 | GO:0003723 | |
Ahy9g2849 | 531 | Gene3D | - | 487 | 527 | IPR038192 | - | |
Ahy9g2849 | 531 | MobiDBLite | consensus disorder prediction | 82 | 115 | - | - | |
Ahy9g2849 | 531 | Gene3D | - | 1 | 113 | IPR012677 | - | |
Ahy9g2849 | 531 | MobiDBLite | consensus disorder prediction | 323 | 375 | - | - | |
Ahy9g2849 | 531 | Pfam | Hinge domain of cleavage stimulation factor subunit 2 | 162 | 229 | IPR025742 | - | |
Ahy9g2849 | 531 | Gene3D | - | 157 | 231 | - | - | |
Ahy9g2849 | 531 | PANTHER | CLEAVAGE STIMULATION FACTOR SUBUNIT 2 | 2 | 526 | - | - | |
Ahy9g2849 | 531 | MobiDBLite | consensus disorder prediction | 323 | 363 | - | - | |
Ahy9g2849 | 531 | SUPERFAMILY | RNA-binding domain, RBD | 4 | 102 | IPR035979 | GO:0003676 | |
Ahy9g2849 | 531 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9 | 79 | IPR000504 | GO:0003723 | |
Ahy9g2849 | 531 | PANTHER | CLEAVAGE STIMULATION FACTOR, 3' PRE-RNA, SUBUNIT 2 | 2 | 526 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ahy9g2849 | Ahy-Chr9 | 117579470 | 117585000 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ahy9g2849 | 9 | 82 | Eukaryotic Initiation Factors Gene Family | AT2G23350 | 31.081 | 1.53e-07 | 52.4 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ahy9g2849 | K14407 | - | gmx:100794399 | 744.191 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Ahy19g2750 | 19 | 149039156 | 149044680 | Ahy9g2849 | 9 | 117579470 | 117585000 | hybridization |