Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy9g2785 ATGTCCTTCCGTAGTATAGTTCGCGATGTAAGGGATGGATTTGGAAGCTTATCGAGGCGGAGTTTTGACTTGAGGCTTTCTGGCCATCACAGGGGCAAGTCTCGTAGCTCTGTCCACGAGTTGCATGATCAGCCTCCGGTTATACAGAACAGCCGGTGGGCTAGTCTTCCACCTGAGCTTCTTCGCGATGTTATTAAGAGGTTGGAGGCTAGTGAGAGTACCTGGCCCGGTCGTAAGCATGTGGTTGCATGCGCAGCTGTGTGCAAAACCTGGAGAGAAATGTGCAAAGAAATTGTGAGCAGTCCTGAATACTGTGGGAAGATTACTTTCCCTGTTTCCCTGAAGCAGCCTGGGCATAGGGATGGACCCATCCAGTGTTTCATCAAGAGAGACAAGTCTAAGCTGACATACCATCTCTTCCTTTGCCTTAGTCCTGCTTTGCTTGTTGAAAATGGGAAGTTTCTTCTTGCTGCAAAAAGAACCAGAAGGACAACTTGCACAGAATATATTATATCAATGGATGCAGATAACGTATCAAGATCTAGTAGCACTTACATTGGAAAACTGAGGTCAAATTTTCTTGGCACCAAATTTATAATTTATGATACACAGCCTCCCTATAACAACGCTCAGCTGTCTCCACCGGGCCAGAGCCGCAGGTTTTATTCGAAAAAGGTCTCTCCGAAGCTCCCTAGTGGCAGCTACAATATCGCCCAGGTCAACTACGAGTTGAATGTGCTTGGTACTAGGGGCCCAAGAAGGATGCATTGCACCATGTATTCAATCCCCACATCATGCCTTGAGCCCGGCGGCTCGGTTCCAGGTCAGCCAGAGCTCCTTCCCCCCTCCCTTGAGGATTCTTTCCGGAGTATCTCCTTCTCAAAGTCGATAGGCCATTCAACTGAATTTAGCAGCTCCAGGTTCTCTGACATACTGGGCGCGGGCAATGAGGACGTGGAGGGAAAGGAGAGACCACTAGTCCTTAAGAACAAGCCTCCACGGTGGCATGAACAGCTGCAGTGTTGGTGCCTCAACTTCAGGGGAAGGGTGACCGTCGCCTCGGTCAAGAATTTCCAGCTGATTGCTGCAAATTCACAACCTGCTGCTCCTCCTCCTCCTGCAGGAACAGGACCACCAACATCTCAGCCGTCGCAGTCTGACCCTGACAAGATCATTCTTCAGTTTGGCAAGGTCGGCAAGGATATGTTCACAATGGACTACCGGTACCCTCTATCAGCATTTCAGGCATTTGCCATATGCTTGACTAGCTTTGATACAAAACTGGCTTGTGAATAG 1296 0.4915 MSFRSIVRDVRDGFGSLSRRSFDLRLSGHHRGKSRSSVHELHDQPPVIQNSRWASLPPELLRDVIKRLEASESTWPGRKHVVACAAVCKTWREMCKEIVSSPEYCGKITFPVSLKQPGHRDGPIQCFIKRDKSKLTYHLFLCLSPALLVENGKFLLAAKRTRRTTCTEYIISMDADNVSRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNAQLSPPGQSRRFYSKKVSPKLPSGSYNIAQVNYELNVLGTRGPRRMHCTMYSIPTSCLEPGGSVPGQPELLPPSLEDSFRSISFSKSIGHSTEFSSSRFSDILGAGNEDVEGKERPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAANSQPAAPPPPAGTGPPTSQPSQSDPDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy9g2785 431 MobiDBLite consensus disorder prediction 365 388 - -
Ahy9g2785 431 Pfam F-box domain 53 100 IPR001810 GO:0005515
Ahy9g2785 431 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 431 - -
Ahy9g2785 431 PANTHER TUBBY-RELATED 1 431 - -
Ahy9g2785 431 Gene3D Tubby Protein; Chain A 110 431 IPR025659 -
Ahy9g2785 431 SUPERFAMILY Tubby C-terminal domain-like 102 431 IPR025659 -
Ahy9g2785 431 Pfam Tub family 114 426 IPR000007 -
Ahy9g2785 431 SUPERFAMILY F-box domain 45 97 IPR036047 GO:0005515
Ahy9g2785 431 ProSitePatterns Tub family signature 1. 346 359 IPR018066 -
Ahy9g2785 431 ProSitePatterns Tub family signature 2. 416 431 IPR018066 -
Ahy9g2785 431 Gene3D - 48 101 - -
Ahy9g2785 431 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Ahy9g2785 431 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Ahy9g2785 431 PRINTS Tubby superfamily signature 328 345 IPR000007 -
Ahy9g2785 431 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Ahy9g2785 431 PRINTS Tubby superfamily signature 409 431 IPR000007 -
Ahy9g2785 431 PRINTS Tubby superfamily signature 346 362 IPR000007 -
Ahy9g2785 431 PRINTS Tubby superfamily signature 388 407 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy9g2785 Ahy-Chr9 116922285 116936758 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy9g2785 1 431 TUB Transcription Factor Family AT1G76900 69.935 0.0 614
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Ahy9g2785 Tub 1.30E-115 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy9g2785 K19600 - qsu:111992792 758.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g2811 19 150028475 150032172 Ahy9g2785 9 116922285 116936758 hybridization
Ahy15g3661 15 159464763 159469051 Ahy9g2785 9 116922285 116936758 PCT
Ahy9g2785 9 116922285 116936758 Ahy15g3661 15 159464763 159469051 PCT