Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy9g2740 ATGGATCGCAAAAGGGGACGGCACGAACATCCTTTCAACGGCACCGGCAATGGCGCCTCCAAGAAATTCAGGCCACCTTCAGCTTCAGAAATGGAGTCTTTTCCAACTGGTTTAGGAAGCAAATTGAAGCCTTGCACAAAGTTTTTCAGCACCTCTGGCTGTCCATTTGGTGAGGGATGCCATTTCTTGCATTATGTTCCTGGTGGCATCAAAGCCGTTCAAATGATGAATGCTGGTAGCAACCCTGCTCTTCCTCAAGTTAGTAGAACACCACCTGTTCCTCCATCTTTCCCGGATGGGTCTTCTCCTCCAATGGTTAAAACCAGATTGTGCAACAAGTATAATTCAAGCGAAGGTTGCAAATTTGGTGACAAATGTCACTTTGCTCATGGTGAGTGGGAGATTGGCAAGCCTACAATGCCTTCATATGAAGACAGACAAAGGATTGGTGGGCGAGTTGAGACTCCAGTTCATGGAGCTGCTGCTGGCTTTGGCGCCTCAGCTACCGCTAAGATTAGTATCAATGCTTCCCTTGCTGGGGCTGTTATTGGGAAAAATGGTATCAACTCGAAGCAAATCTGTCGTGTAACAGGAGCAAAACTTTCTATCAGGGAACATGATTCTGATCCTAACCTTAAAAACATTGAGCTTGAAGGAAGTTTTGATCAGATCAAACAAGCAAGTTCCATGGTCCATGAACTTATTCTGAATGTTAGTTCGGCTGCTGGACCTGCAAAGAAGAATGTCACTTCATATGGTCCTGGTTCAAACAACTTCAAAACCAAGATATGTGAAAAATTTTCAAAAGGCTCCTGCACTTTCGGGGAGAAGTGCCACTTTGCCCATGGAATAGAAGAATTACGCAAGAGTGGAATGTGA 879 0.4494 MDRKRGRHEHPFNGTGNGASKKFRPPSASEMESFPTGLGSKLKPCTKFFSTSGCPFGEGCHFLHYVPGGIKAVQMMNAGSNPALPQVSRTPPVPPSFPDGSSPPMVKTRLCNKYNSSEGCKFGDKCHFAHGEWEIGKPTMPSYEDRQRIGGRVETPVHGAAAGFGASATAKISINASLAGAVIGKNGINSKQICRVTGAKLSIREHDSDPNLKNIELEGSFDQIKQASSMVHELILNVSSAAGPAKKNVTSYGPGSNNFKTKICEKFSKGSCTFGEKCHFAHGIEELRKSGM* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy9g2740 292 ProSiteProfiles Type-1 KH domain profile. 167 231 - -
Ahy9g2740 292 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 12 291 - -
Ahy9g2740 292 SUPERFAMILY CCCH zinc finger 258 288 IPR036855 GO:0046872
Ahy9g2740 292 Gene3D - 100 137 - -
Ahy9g2740 292 Gene3D - 258 290 - -
Ahy9g2740 292 ProSiteProfiles Zinc finger C3H1-type profile. 105 133 IPR000571 GO:0046872
Ahy9g2740 292 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 259 283 IPR000571 GO:0046872
Ahy9g2740 292 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 107 132 IPR000571 GO:0046872
Ahy9g2740 292 Gene3D K Homology domain, type 1 161 257 IPR036612 GO:0003723
Ahy9g2740 292 ProSiteProfiles Zinc finger C3H1-type profile. 39 67 IPR000571 GO:0046872
Ahy9g2740 292 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 163 238 IPR036612 GO:0003723
Ahy9g2740 292 Pfam RNA-binding, Nab2-type zinc finger 44 64 - -
Ahy9g2740 292 Pfam KH domain 170 232 IPR004088 GO:0003723
Ahy9g2740 292 SMART kh_6 166 236 IPR004087 GO:0003676
Ahy9g2740 292 MobiDBLite consensus disorder prediction 1 36 - -
Ahy9g2740 292 SMART c3hfinal6 105 132 IPR000571 GO:0046872
Ahy9g2740 292 SMART c3hfinal6 258 284 IPR000571 GO:0046872
Ahy9g2740 292 SMART c3hfinal6 39 66 IPR000571 GO:0046872
Ahy9g2740 292 SUPERFAMILY CCCH zinc finger 103 135 IPR036855 GO:0046872
Ahy9g2740 292 ProSiteProfiles Zinc finger C3H1-type profile. 258 285 IPR000571 GO:0046872
Ahy9g2740 292 CDD KH-I 171 232 - -
Ahy9g2740 292 SUPERFAMILY CCCH zinc finger 40 65 IPR036855 GO:0046872
Ahy9g2740 292 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 14 12 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy9g2740 Ahy-Chr9 116282384 116286132 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ahy9g2740 KH_1 1.00E-09 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy9g2740 - - gmx:100792652 466.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g2874 19 151213519 151217145 Ahy9g2740 9 116282384 116286132 hybridization