Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy9g2739 ATGGGGAAACGTTTGAGGTACGAAGAGAACGCAGGGTTTCAGAAGTTCAAAGGCGTTGTTCCTCAGCAAAACGGGCATTGGGGAGCACAAATATACGCAAACCACCAGAGAATATGGCTGGGAACATTCAAGACGGAAAGAGAAGCCGCCATGGCTTACGACAGCGCCACCATCAAGCTAAGAAGCGGCGAAAGCCACAGAAACTTCCCGTGGAACGATCAAACCGTTCAGGAGCCTTATTTCCAGAGCTATTACAGCACGGAAACTGTTCTTACCATGATCAGAGACGGTACATATCCCTCCAAATTTACATCGTTTCTTCAAAATCAAAGCCATAAAGAAGAAGCCACAGGAACAATTTATTCCCATAATACGCGCATCAAGATTCGAGGAGGAGAACAGTTTTCTTGCACGCAACTCTTTCAGAAAGAATTAACGCCCAGCGACGTTGGGAAACTGAACAGGCTTGTTATTCCAAAGAAACATGCAGTTACGTATTTGCCCTTTGTTGATGGAAATAACAATAATGCAATGGAAGCAGGGGAATTCGGCGGCGGTGGCGGCGGCGTTGATGTGGAGGTTATGTTTTACGATAAGTTGATGAGATCGTGGAAATTCAGGTACTGCTATTGGAAGAGTAGCCAGAGTTATGTGTTCACGAGAGGGTGGAACCGTTTCGTGAAGGACAAGAAACTCAAGGCTAAAGACGTCATTGCATTTTACATGTGCGAGCCTGTGAATAATGAAGTTCATCAGCACCGTCTGTTTGGGTTGATCGATGTAATTTATAATAATACGGAAAATGTTGAAGCCACAAAACGAGAGGTAATTGGGAAGAGTACTACTAGGTTAGCTTGCAGTGAAGTAGTTGTAGAAGATATGGAAGAAGAAGATGAAGACAGAGAAGAAGAAGAAGAACATAAAGTTGATGGAATGGATTTGAATCCACCACACAAAGGTGTGAAGCTATTTGGCGTATCTATCAACTGA 990 0.4374 MGKRLRYEENAGFQKFKGVVPQQNGHWGAQIYANHQRIWLGTFKTEREAAMAYDSATIKLRSGESHRNFPWNDQTVQEPYFQSYYSTETVLTMIRDGTYPSKFTSFLQNQSHKEEATGTIYSHNTRIKIRGGEQFSCTQLFQKELTPSDVGKLNRLVIPKKHAVTYLPFVDGNNNNAMEAGEFGGGGGGVDVEVMFYDKLMRSWKFRYCYWKSSQSYVFTRGWNRFVKDKKLKAKDVIAFYMCEPVNNEVHQHRLFGLIDVIYNNTENVEATKREVIGKSTTRLACSEVVVEDMEEEDEDREEEEEHKVDGMDLNPPHKGVKLFGVSIN* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy9g2739 329 SUPERFAMILY DNA-binding pseudobarrel domain 139 254 IPR015300 -
Ahy9g2739 329 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 4 329 - -
Ahy9g2739 329 Pfam B3 DNA binding domain 141 244 IPR003340 GO:0003677
Ahy9g2739 329 MobiDBLite consensus disorder prediction 294 318 - -
Ahy9g2739 329 Gene3D AP2/ERF domain 14 71 IPR036955 GO:0003700|GO:0006355
Ahy9g2739 329 CDD AP2 14 72 IPR001471 GO:0003700|GO:0006355
Ahy9g2739 329 SUPERFAMILY DNA-binding domain 15 72 IPR016177 GO:0003677
Ahy9g2739 329 Pfam AP2 domain 15 61 IPR001471 GO:0003700|GO:0006355
Ahy9g2739 329 SMART B3_2 141 262 IPR003340 GO:0003677
Ahy9g2739 329 Gene3D - 136 264 IPR015300 -
Ahy9g2739 329 ProSiteProfiles AP2/ERF domain profile. 15 70 IPR001471 GO:0003700|GO:0006355
Ahy9g2739 329 SMART rav1_2 15 76 IPR001471 GO:0003700|GO:0006355
Ahy9g2739 329 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 4 329 IPR044800 GO:0003700
Ahy9g2739 329 CDD B3_DNA 140 242 IPR003340 GO:0003677
Ahy9g2739 329 ProSiteProfiles B3 DNA-binding domain profile. 141 256 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy9g2739 Ahy-Chr9 116270579 116271568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy9g2739 11 328 RAV Transcription Factor Family AT1G50680 52.744 3.50e-105 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Ahy9g2739 B3 2.10E-24 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy9g2739 K09287 - gmx:102660503 362.073
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g2876 19 151250933 151252151 Ahy9g2739 9 116270579 116271568 hybridization