Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy9g2707 ATGGCATCAGCTTCTTGTGCCAGTAAGAGCCCGTTACCAATGAAAGATGCTGGAGTAGCTTCAGCTTCGGGGTATTATGTGTATCCTCCACCGCAAGCAAGCTACGAGGAGGTTGCAAACAATCCCAAGCTCTTCATGGAAACCTTGGAGAAGCTCCACTCTTCTATGGGCACCAAGTTCATGATTCCCATTATTGGGGGAAGAGAATTAGATTTGCATCGACTCTTTGTTGAAGTAACTTCTAGAGGAGGTATTGAGAAGATAATCAAAGAGAGAAAATGGAAGGAAGTAACTGCAACTTTCAATTTTCCATCAACAGCTACAAATGCCTCTTTTGTTCTGCGGAAATACTATGCTTCATTGCTTTACCATTATGAACAAATCTACTATTTCAAAGCCCCTGGATGGAGTCCAGCTGCTTCCAGTGGTCTGCAGTGTCAATCATCCATTCCAGTTCCAGTGCAAAAGGCACAGTTTATGCCGCCGTCATCAGGATTTCAATCCCCGGTCTTTCAACAGTCGAGCGCTAATGCTGCTGAATTGCCTGAAGCCATGAGAAAATCTTCAGGAGGGTCTCAGGTGATTGGGGTCATTGATGGAAAGTTCGAAAGTGGCTATCTAGTTACTGTAACAATAGGTTCAGAGAAACTTAAAGGCGTCCTCTATCAGGCTCCACAAAAACCTGGATTGTCTACTTCTCATCACGGAGTTTTGGCCAACAACAGTGGCGCCTCTGCTCCGTTAGGTGTCCGTCGGCGCCGGCGCAGAAAGAAATCAGAAATAAAGCGGAGAGATCCTGCTCATCCAAAACCCAACAGAAGTGGTTACAATTTCTTTTTTGCGGAACAGCATGCAAGGCTAAAAGCACACCATCATGGGAAGGACAGGGAGATTAGTAGGATCATTGGCGAACTCTGGAACAAGTTGAATGAATCAGAAAGAGTAGTTTATCAAGAGAAGGCTATGAAGGATAAAGAGAGGTATAGAGTGGAAATGGAGGATTATCGTGAGAAGCAGAAGATGGGCCAAGTTATTAGTGATGCTGTGCCTCTGCAGCAGCGGCTTCCTGAGGACATGAAATTGGATGAAACGGAGGGCGATTCTTTCCAAACACCAGAGGAAAGCAGTACTGGTGGAAGCGACTATGACGATGATAGAGCTATGGAAAAAGATTTTGATGAGGATGCATCACCGGTTGCCGGCATGGGTGCTGAATCTAGCTGCTTGGGCTCGGAGAAGTCACCCAACGGAGGTTTATGA 1260 0.4579 MASASCASKSPLPMKDAGVASASGYYVYPPPQASYEEVANNPKLFMETLEKLHSSMGTKFMIPIIGGRELDLHRLFVEVTSRGGIEKIIKERKWKEVTATFNFPSTATNASFVLRKYYASLLYHYEQIYYFKAPGWSPAASSGLQCQSSIPVPVQKAQFMPPSSGFQSPVFQQSSANAAELPEAMRKSSGGSQVIGVIDGKFESGYLVTVTIGSEKLKGVLYQAPQKPGLSTSHHGVLANNSGASAPLGVRRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKAHHHGKDREISRIIGELWNKLNESERVVYQEKAMKDKERYRVEMEDYREKQKMGQVISDAVPLQQRLPEDMKLDETEGDSFQTPEESSTGGSDYDDDRAMEKDFDEDASPVAGMGAESSCLGSEKSPNGGL* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy9g2707 419 SMART hmgende2 268 337 IPR009071 -
Ahy9g2707 419 Gene3D High mobility group box domain 253 348 IPR036910 -
Ahy9g2707 419 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 3 403 - -
Ahy9g2707 419 SUPERFAMILY ARID-like 34 136 IPR036431 GO:0003677
Ahy9g2707 419 ProSiteProfiles ARID domain profile. 39 130 IPR001606 GO:0003677
Ahy9g2707 419 Pfam HMG (high mobility group) box 269 336 IPR009071 -
Ahy9g2707 419 Pfam ARID/BRIGHT DNA binding domain 43 126 IPR001606 GO:0003677
Ahy9g2707 419 MobiDBLite consensus disorder prediction 379 396 - -
Ahy9g2707 419 Coils Coil 318 338 - -
Ahy9g2707 419 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 3 403 - -
Ahy9g2707 419 SUPERFAMILY HMG-box 257 340 IPR036910 -
Ahy9g2707 419 SMART bright_3 40 131 IPR001606 GO:0003677
Ahy9g2707 419 Gene3D - 32 135 IPR036431 GO:0003677
Ahy9g2707 419 MobiDBLite consensus disorder prediction 229 276 - -
Ahy9g2707 419 MobiDBLite consensus disorder prediction 345 419 - -
Ahy9g2707 419 CDD ARID_HMGB9-like 41 126 IPR045303 GO:0003677
Ahy9g2707 419 SMART ARID_2 36 126 - -
Ahy9g2707 419 CDD HMGB-UBF_HMG-box 269 333 - -
Ahy9g2707 419 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 269 336 IPR009071 -
Ahy9g2707 419 MobiDBLite consensus disorder prediction 249 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy9g2707 Ahy-Chr9 115910511 115915345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy9g2707 1 367 ARID Transcription Factor Family AT1G04880 61.640 2.18e-140 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Ahy9g2707 ARID 4.90E-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy9g2707 - - gmx:100783284 602.823