Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy9g2649 ATGGTTCTATCGAACAAGAAGCTGAAGCAGAAGCTTAGAGCTGCATTGGTCAAACAGCAAAGCAACTCTGATGTAGTTGGTGTTGATGCCCCTTCTTCTTCTTCTCCTTCTTCTCATTCTCTCAAAACTCTTCTTGACTCTTCTGCCCACAAGCCCGTATTATCCAAGAGAGAGAAACGCCGAAAGCTTCGATCTTTGGAACACCCTCCAGCTGAGGCTTCTCCACAAGCTGCCCATGAAGTTGAAGGAAGCAACAAGGAAAATGGCTCAGAGGGTTTGGGCAGTAAGAAGAAGAATAAGAAGAGGAAGGTAAAGGAGGATGCTGATGTTGCAACTGAAGCTCCCAATGATGCTGAGAAATCGACGAACAAGAAGGAGAAGAAGAAGAAGAAGAAGAAGCAGAAGAAGAAAAAGAAGACCCAAACGGTGGAGCAAAACAATTCCAATCATGAAGGGGAAGTGCCACAAGCTACAGTGTTGAATGAGAGTAGTAATAATACTAATGCTAATAGCAGTCAAGATGGTTGTGATGATCCTACAAAGGTTTATGTGGGAGGAATTCCCTATTACTCAACCGAGGATGATATTCGAAGTTATTTTGAGAGTTGTGGCACCATAACTGAAGTTGATTGCATGTGTTTTCCTGAGAGTGGCAAGTTTAGAGGGATTGCCATTATTAGTTTTAAGACAGAAGCAGCAGCAAAACGTGCATTGGCTCTTGATGGAGCTGACATGGGAGGACTCTTTCTTAAAATCCAGCCATACAAAGCAACTCGAGTCAATAAAGTATCAGATTTTGCTCCAAAGATCATGGAAGGATACAATAGAATATATGTTGGGAATTTGTCATGGGATATAACCGAGGAAGAACTCAGAAAATTCTTCTCGAATTGCAACATAGCTTCGCTGCGATTTGGTATGGACAAGGATACTGGAGAATTTCGAGGGTATGCACATGTGGATTTCAGTGATAGTCAGTCACTAAAAACAGCTCTTACAATGGACCAAAAGCTTTTGTCCGGGAGACCTGTCAGGATAAGTTGCGCAGTCCCTTTGAAGAAGAAACCAACAATGCATACAACCTCTGCGACTACAACTACAACTACAACTACAAGTAATGGGGCTGATGGCGAGAAATCAACTTCCACTGTTTCCGCTGTAAGTGGCAAGATAAAGAGGAGGACGTGCTATGAGTGTGGCGAAAAAGGACATCTTTCATCAGACTGCCCAAAGAAACAAACTATGGATCCAGCTTCAACCTGA 1263 0.4283 MVLSNKKLKQKLRAALVKQQSNSDVVGVDAPSSSSPSSHSLKTLLDSSAHKPVLSKREKRRKLRSLEHPPAEASPQAAHEVEGSNKENGSEGLGSKKKNKKRKVKEDADVATEAPNDAEKSTNKKEKKKKKKKQKKKKKTQTVEQNNSNHEGEVPQATVLNESSNNTNANSSQDGCDDPTKVYVGGIPYYSTEDDIRSYFESCGTITEVDCMCFPESGKFRGIAIISFKTEAAAKRALALDGADMGGLFLKIQPYKATRVNKVSDFAPKIMEGYNRIYVGNLSWDITEEELRKFFSNCNIASLRFGMDKDTGEFRGYAHVDFSDSQSLKTALTMDQKLLSGRPVRISCAVPLKKKPTMHTTSATTTTTTTTSNGADGEKSTSTVSAVSGKIKRRTCYECGEKGHLSSDCPKKQTMDPAST* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy9g2649 420 MobiDBLite consensus disorder prediction 125 139 - -
Ahy9g2649 420 SMART rrm1_1 276 347 IPR000504 GO:0003723
Ahy9g2649 420 SMART rrm1_1 181 253 IPR000504 GO:0003723
Ahy9g2649 420 MobiDBLite consensus disorder prediction 102 124 - -
Ahy9g2649 420 ProSiteProfiles Zinc finger CCHC-type profile. 396 411 IPR001878 GO:0003676|GO:0008270
Ahy9g2649 420 Gene3D - 112 264 IPR012677 -
Ahy9g2649 420 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 71 418 - -
Ahy9g2649 420 MobiDBLite consensus disorder prediction 15 45 - -
Ahy9g2649 420 Coils Coil 118 138 - -
Ahy9g2649 420 SUPERFAMILY Retrovirus zinc finger-like domains 389 415 IPR036875 GO:0003676|GO:0008270
Ahy9g2649 420 MobiDBLite consensus disorder prediction 14 155 - -
Ahy9g2649 420 CDD RRM2_PHIP1 276 347 IPR034362 -
Ahy9g2649 420 SUPERFAMILY RNA-binding domain, RBD 158 261 IPR035979 GO:0003676
Ahy9g2649 420 MobiDBLite consensus disorder prediction 357 384 - -
Ahy9g2649 420 PANTHER PHRAGMOPLASTIN INTERACTING PROTEIN 1-RELATED 71 418 - -
Ahy9g2649 420 MobiDBLite consensus disorder prediction 401 420 - -
Ahy9g2649 420 Gene3D - 269 358 IPR012677 -
Ahy9g2649 420 Gene3D - 369 419 - -
Ahy9g2649 420 Pfam Zinc knuckle 394 411 IPR001878 GO:0003676|GO:0008270
Ahy9g2649 420 SUPERFAMILY RNA-binding domain, RBD 268 356 IPR035979 GO:0003676
Ahy9g2649 420 SMART c2hcfinal6 395 411 IPR001878 GO:0003676|GO:0008270
Ahy9g2649 420 CDD RRM1_PHIP1 182 253 IPR034361 -
Ahy9g2649 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 277 344 IPR000504 GO:0003723
Ahy9g2649 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 182 248 IPR000504 GO:0003723
Ahy9g2649 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 180 257 IPR000504 GO:0003723
Ahy9g2649 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 275 351 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy9g2649 Ahy-Chr9 115440545 115442705 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy9g2649 166 349 Eukaryotic Initiation Factors Gene Family AT3G16380 29.231 1.08e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy9g2649 - - adu:107467708 707.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g2974 19 152465980 152468259 Ahy9g2649 9 115440545 115442705 hybridization