Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy9g2627 ATGCCCGACAATGGAGACCATATCCATGATTTTGTCAACTCAACTTGGAGATTTTGTTCTTCTTTAGGTGGTTGGATTTCGGGTTTAATATTGAAACCTTGCAAAAAAGTGGTTGGCATAGTATTTACGAGTTCTCTTTCTAGGTTGGCTGACGGAAAGGACAATTGTTATCCTGAGTTCATGGATGAATGTATATATATTAGCTCATCAGATGATGACCTTGAGGAGATAGAAGATCCAAAAAGGAATCTCCCTCAATGGGCTGCTGCTGAAAGGAATTCAGATTATGGTGGACGGCCAAGGCACGATAGTTTTTCAAGAGGCACAAGTACTTCAGGTGCTAGCTCGTCCAATGTTAATAATACTCATTCCCAAATCAAGCTTCATGCTCAACCTGTATCTAGCAAAAATGGACTGAATCAGAGAGTTGCACGTCGAGAAGAACCTTCATATCATGCACAGAATGGAAACACAAGTCAGTCAACTCAACAGGCTTTCAAGCGGGCTCTTCCTCAAACTGTTCATCCATATACATCAAGGGTTCCACCATCTTCGTCGTTTGCACCTGATAGCAGATTAAGTAACATAAAGGATAACATGAACAATAGTCAGTTTTTCGATACATATAGGAATCGTCCCCATGGAGTAGGACCTAGCACGATGAGCGACAAGGCCTACAACCGTGGCCCATTTATGAGGGGAAGTGATGAAGATCGCTTCATGAATCAAAATGGTGTGATTAGGGTTCTTCCTCCATCTTTGATGCATGGTAAGTCTGTACCTCCACAGTATGCTAGTTCCAGTGAACCTGCATTCCGCTCTGGTGCAGGTGATGAACGGGCTCCTGGAAGTGATGAGAGACTAATTTATGAGGCCATTGTGGAGGATCTCAGTCAAAATAGAATAGAAGTTGATGTACCTGAGGGTCACATGTGTGTCTCTCTTCTTAGACATCAGAAAATTGCATTGGCTTGGATGCTTCAGAAGGAAACCAGAAGTTTGCATTGCCTTGGGGGGATTTTGGCTGATGATCAGGGCCTTGGCAAGACAGTTTCAATGATTGCCCTCATCCTAATGCAGAGGTCACTGCAATCAAAATCTAAAACAGACGATGCATGCAATCATAAAACTGAAGCTTTGAATTTGGACGATGAGGATGATCGTGCTACTGTTGATTTGGAAAAGCTTGAAAATAAAGAAGAATCTGATGATGTAAAACCTAGTACAGAACCTAGTAGTTCAACACGAGCACCAAGTAGGAAAAGGCCGGCTGCTGGCACACTTGTTGTTTGCCCTGCAAGTGTTCTTCGACAATGGGCCAGAGAGCTTAAAGAAAAAGTTGTTGAAGAGCAGAGACTTGCTGTTTTGGTTTATCACGGGGGCAGTAGGACAAAGGATCCTACTGAACTTGCAAGATATGATGTGGTCCTCACAACATATGCTATTGTGACTAATGAAGTTCCAAAGCAGCCGTTGGTTGAGGAGGATGATATTGATGAAAAAATGGGGGAAAGATTTGGGATATCCTCTGAATTTTCTGCCAGTAAAAAGAGGAAGCAGTTATTTAATGGAAGTAAGAAAAGTAAAAAGGGTAGAAAGGGATTAGACGAATCTTCAATTGAATCTGCTTCTGGTCCTCTTGCAAAAGTAGGTTGGTTTAGGGTTATTCTAGATGAAGCTCAAACAATAAAGAACCATAGAACTCAGGTAGCTAGAGCTTGCTGCAGTCTTAGGGCCAAAAGGAGGTGGTGCTTATCTGGAACACCTATTCAAAATACAATTGATGATTTGTATAGCTACTTTAGGTTCCTGAAGTATGATCCTTATGCTGTGTATAAATCGTTCTACAATACAATAAAAGTTCCGATATCCAGAAATTCTATCCAAGGGTACAAGAAGCTTCAGGCAGTTCTGAGGGCCATTATGCTTCGCCGTACAAAAGGAACTTTGATCGATGGGAAGCCAATAATCAATTTACCTCCTAAAACAATTGAGCTGACTAAGGTGGATTTCTCCACTGAGGAGCGGGCCTTCTATATGCAGTTGGAAGCAGATTCACGTTCCCAATTTAAGGCCTATGCTGCTGCTGGCACGGTGAATCAAAACTATGCAAATATTCTTTTAATGCTTTTGCGTCTTCGTCAAGCTTGTGATCACCCACGTCTTGTTAAAGATTATTATTCTGATCCTCTTGGGAAATCCTCTGTGGAAATGGCAAACTCACTTCCAAAGGAGATGTTGATTAATCTGTTTAATAGTTTGGAAACGACCTTTGCTATATGCTGTACTTGTGAGGATCCACCTGAAGACGCAGTTGTTACAATGTGTGGCCATGTCTTCTGTTATCAATGTGTATCAGATTACTTGAATGGTGATGATAATACATGCCCTGCTCGTGGTTGTAAAGCAGCACTTGCAGAAGATGTTGTTTTCTCCAAAGCTACTTTGAGGAGTTGCTTGGCTGATGAACTTGGTGGTAGTAATTCCATAAAAGCGCATGATTTTGATCATTCACTAGTGCAGCAGAATTGCGACTCAGATGTTAGGATTATGAAAAACACAAGAAAATATTCAGACTCCACAACTGTAGGACCAATAAAAGCTATAGTTTTTTCCCAATGGACTAGCATGTTGGACTTGGTTGAGGCATCATTGCAACAATCCTGTATGAAATATAGGAGACTTGATGGGCGGATGTCTCTGATTGCTAGGGACAGATCTGTTAAAGATTTCAATACTGATCCCGAGGTAACTGTTATGCTGATGTCACTAAAAGCAGGAAATCTTGGTTTGAATATGGTTGCTGCATGCCATGTTATTCTTTTGGATCTGTGGTGGAATCCAACAACTGAAGATCAAGCTATTGATCGAGCTCATAGAATTGGACAGACTCGTCCTGTTACTGTGACACGGCTTACTGTAAAAGATACAGTTGAAGACAGAATACTGGCTCTTCAGGAAGAGAAGAGGAAAATGGTTGCATCTGCTTTTGGGGAAGAACATGCTGGCAGTTCTGCGACTCGCCTTACAATGGATGATCTGAAATATCTTTTCATGGTGTAG 3063 0.4156 MPDNGDHIHDFVNSTWRFCSSLGGWISGLILKPCKKVVGIVFTSSLSRLADGKDNCYPEFMDECIYISSSDDDLEEIEDPKRNLPQWAAAERNSDYGGRPRHDSFSRGTSTSGASSSNVNNTHSQIKLHAQPVSSKNGLNQRVARREEPSYHAQNGNTSQSTQQAFKRALPQTVHPYTSRVPPSSSFAPDSRLSNIKDNMNNSQFFDTYRNRPHGVGPSTMSDKAYNRGPFMRGSDEDRFMNQNGVIRVLPPSLMHGKSVPPQYASSSEPAFRSGAGDERAPGSDERLIYEAIVEDLSQNRIEVDVPEGHMCVSLLRHQKIALAWMLQKETRSLHCLGGILADDQGLGKTVSMIALILMQRSLQSKSKTDDACNHKTEALNLDDEDDRATVDLEKLENKEESDDVKPSTEPSSSTRAPSRKRPAAGTLVVCPASVLRQWARELKEKVVEEQRLAVLVYHGGSRTKDPTELARYDVVLTTYAIVTNEVPKQPLVEEDDIDEKMGERFGISSEFSASKKRKQLFNGSKKSKKGRKGLDESSIESASGPLAKVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKSFYNTIKVPISRNSIQGYKKLQAVLRAIMLRRTKGTLIDGKPIINLPPKTIELTKVDFSTEERAFYMQLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPRLVKDYYSDPLGKSSVEMANSLPKEMLINLFNSLETTFAICCTCEDPPEDAVVTMCGHVFCYQCVSDYLNGDDNTCPARGCKAALAEDVVFSKATLRSCLADELGGSNSIKAHDFDHSLVQQNCDSDVRIMKNTRKYSDSTTVGPIKAIVFSQWTSMLDLVEASLQQSCMKYRRLDGRMSLIARDRSVKDFNTDPEVTVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRLTVKDTVEDRILALQEEKRKMVASAFGEEHAGSSATRLTMDDLKYLFMV* 1021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy9g2627 1020 MobiDBLite consensus disorder prediction 258 282 - -
Ahy9g2627 1020 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 853 1015 IPR001650 -
Ahy9g2627 1020 SMART helicmild6 879 962 IPR001650 -
Ahy9g2627 1020 MobiDBLite consensus disorder prediction 76 141 - -
Ahy9g2627 1020 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 330 607 IPR014001 -
Ahy9g2627 1020 Gene3D - 660 1019 IPR027417 -
Ahy9g2627 1020 SUPERFAMILY RING/U-box 758 807 - -
Ahy9g2627 1020 MobiDBLite consensus disorder prediction 519 539 - -
Ahy9g2627 1020 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 85 1019 - -
Ahy9g2627 1020 ProSitePatterns Zinc finger RING-type signature. 776 785 IPR017907 -
Ahy9g2627 1020 MobiDBLite consensus disorder prediction 394 424 - -
Ahy9g2627 1020 CDD DEXDc_SHPRH-like 315 645 - -
Ahy9g2627 1020 Pfam SNF2-related domain 318 723 IPR000330 GO:0005524|GO:0140658
Ahy9g2627 1020 Coils Coil 379 399 - -
Ahy9g2627 1020 Gene3D - 412 501 IPR038718 -
Ahy9g2627 1020 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 748 811 IPR013083 -
Ahy9g2627 1020 Pfam Zinc finger, C3HC4 type (RING finger) 761 797 IPR018957 GO:0046872
Ahy9g2627 1020 MobiDBLite consensus disorder prediction 104 140 - -
Ahy9g2627 1020 MobiDBLite consensus disorder prediction 203 227 - -
Ahy9g2627 1020 CDD SF2_C_SNF 867 972 - -
Ahy9g2627 1020 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 85 1019 - -
Ahy9g2627 1020 Gene3D - 285 378 IPR038718 -
Ahy9g2627 1020 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 305 645 IPR027417 -
Ahy9g2627 1020 Gene3D - 511 656 IPR038718 -
Ahy9g2627 1020 ProSiteProfiles Zinc finger RING-type profile. 761 797 IPR001841 -
Ahy9g2627 1020 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 654 1019 IPR027417 -
Ahy9g2627 1020 SMART ultradead3 311 624 IPR014001 -
Ahy9g2627 1020 Pfam Helicase conserved C-terminal domain 867 962 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy9g2627 Ahy-Chr9 115275302 115283515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy9g2627 61 920 RAD5 or RAD16-like Gene Family AT1G50410 53.376 0.0 868
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ahy9g2627 SNF2_N 1.20E-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy9g2627 - - lang:109335781 1455.65