Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy9g2624 ATGCTTCAGAAGGAAACCAGAAGTTTGCATTGCCTTGGGGGTATTTTGGCTGATGATCAGGGCCTTGGCAAGACAGTTTCAATGATTGCCCTCATCCTAATGCAGAGGTTACTGCTCTCAAGATCTAAAACAAACGATGCATCCAATCATAAAACTGAAGCTTTGAATTTGGATGATGAAGATGATCGTGTTACTGTTAATGTGGAAAAGCTTGAAAATAAAGAAGAATCTGATGATGTAGAAGCTATTACAGAACCTAGGAAACGGCCAGCTGCTGGTACACTTGTTGTTTGCCCGGCAAGTGTTCTTCGACAATGGGCCAGAGAGCTTAAAGAAAAAGTTGTTGAAGAGCAGAAACTTACTGTTTTGGTTTATCATGGGGGCAGCAGGACAAAGGATCCTACTGAACTTGCAAGATATGATGTGGTCCTCACAACATATGCTGTTGTGACTAATGAAGTTCCAAAGCAGCCATTGGTTGAGGAGGATGATATTGATGAAAAAATAGGGGAAATATTTGGAAGTAAGAAAACTAAAAAGGGTAGAAAGGGATTAGACGATTCTTCGATTGAATGTGCTTCTGGTCCTCTTGCAGAAGTACGTTGGTTTAGGGTTATTCTAGATGAAGCTCAAACAATAAAGAACCATAGAACTCAGGTAGCTAGAGCTTGCTGCAGTCTTAGGACCAAAAGAAGGTGGTGCTTATCTGGAACACCTATTCAAAATACTATCGATGATCTTTATAGCTACTTTAGGTTCCTGAAGTATGATCCTTATGGTGTATATAAATCGTTCTACAATACAATAAAAGTTCCAATATCCAGAAATTCTATAGAAGGGTACAAGAAGCTTCAAGCAATTTTGTGGACTATTATGCTTCGCCGTACAAAAGGAACTATGATCGATGGGAAGCCAATAATCAATTTACCTCCTAAAACAATTGAGCTGACTAAGGTGGATTTCTCCACTGAGGAACGGGCCTTCTATATGCAGTTGGAAGATGATTCCCGTTCCCAATTTAAGGCATATGCTGCTGTTGGCACTGTGAATAAAAACTATGCAAATATTCTTTCAATGCTTTCCCGTCTTCGTCTAGCTTGTGATCACCCGCATCTTGTTAAAGGTGACTATTGTCATTCACTAGTGCAGCAGAGTGAGTACACCTCATCTAAAATCAAAGCTGTCCTTGAGATTCTGCATTCAAATTGTAAACTGAATAGTCCTAGCTCTGGTTTACTAAATTCTGCTGGAAGCCGTAGAGGTTCACCATCTTCTGATGATTCATATATTGAAGATTGCGACTCAGATGCCAGGATTATGAAACAAACAAGAAAATATTCAGAGTCAACAACTGTAGGACCAATAAAGGCTGTAGTTTTTTCCCAATGGACTAGAATGTTGGACTTAGTTGAGGCATCATTGCAACAATCCCGTATACAATACAGGAGACTTGATGGGACGATGTCTCTGATTGCTAGAGACAGATCTGTTAAAGATTTTAATACTGATCCCAAGGTAACTGTTATGCTGATGTCGCTAAAAGCAGGAAATCTTGGTTTGAATATGGTTGCTGCGTGTCATGTTATTCTTTTGGATCCGTGGTGGAATCCAACAACTGAAGATCAAGCTATTGATCGAGCTCATAGAATTGGACAGACTCGTCCTGTTACAGTGACACGGCTCACTATAAAAGATACAGTTGAAGACAGAATACTGGCTCTTCAGGAAGAGAAGAGGAAAATGGTTGCATGCACTTTTGGTGAAGACCATGCCGGCAGCTCTGAGACTCGCCTTTCAGTGGATGATCTGAAATATCTTTTCGGTGTAGATTCTTAG 1836 0.4025 MLQKETRSLHCLGGILADDQGLGKTVSMIALILMQRLLLSRSKTNDASNHKTEALNLDDEDDRVTVNVEKLENKEESDDVEAITEPRKRPAAGTLVVCPASVLRQWARELKEKVVEEQKLTVLVYHGGSRTKDPTELARYDVVLTTYAVVTNEVPKQPLVEEDDIDEKIGEIFGSKKTKKGRKGLDDSSIECASGPLAEVRWFRVILDEAQTIKNHRTQVARACCSLRTKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYGVYKSFYNTIKVPISRNSIEGYKKLQAILWTIMLRRTKGTMIDGKPIINLPPKTIELTKVDFSTEERAFYMQLEDDSRSQFKAYAAVGTVNKNYANILSMLSRLRLACDHPHLVKGDYCHSLVQQSEYTSSKIKAVLEILHSNCKLNSPSSGLLNSAGSRRGSPSSDDSYIEDCDSDARIMKQTRKYSESTTVGPIKAVVFSQWTRMLDLVEASLQQSRIQYRRLDGTMSLIARDRSVKDFNTDPKVTVMLMSLKAGNLGLNMVAACHVILLDPWWNPTTEDQAIDRAHRIGQTRPVTVTRLTIKDTVEDRILALQEEKRKMVACTFGEDHAGSSETRLSVDDLKYLFGVDS* 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy9g2624 611 Gene3D - 2 307 IPR038718 -
Ahy9g2624 611 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 5 257 IPR014001 -
Ahy9g2624 611 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 380 607 - -
Ahy9g2624 611 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 304 610 IPR027417 -
Ahy9g2624 611 CDD DEXDc_SHPRH-like 11 295 - -
Ahy9g2624 611 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 380 607 - -
Ahy9g2624 611 SMART ultradead3 2 274 IPR014001 -
Ahy9g2624 611 SMART helicmild6 468 551 IPR001650 -
Ahy9g2624 611 Pfam SNF2-related domain 11 373 IPR000330 GO:0005524|GO:0140658
Ahy9g2624 611 Gene3D - 310 610 IPR027417 -
Ahy9g2624 611 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 295 IPR027417 -
Ahy9g2624 611 Pfam Helicase conserved C-terminal domain 455 551 IPR001650 -
Ahy9g2624 611 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 1 385 - -
Ahy9g2624 611 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 438 604 IPR001650 -
Ahy9g2624 611 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 1 385 - -
Ahy9g2624 611 CDD SF2_C_SNF 456 561 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy9g2624 Ahy-Chr9 115218143 115221957 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy9g2624 380 509 RAD5 or RAD16-like Gene Family AT1G50410 47.692 2.80e-24 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ahy9g2624 SNF2_N 1.40E-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy9g2624 - - ahf:112712269 1190.64