Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ahy9g2622 | ATGATTCTTCTGATCCTCTTGGGAAATAATTTGGAAACAACCTCTGCTATATGCTGTGCTTGCGAGGATCCACCTGAAGACCCTGTTGTTACAATGCGTGGCCATGTCTTCTGTTATCAATGTGTATCAGATTACTTGAATGGTGATGGTAATACATGCTCTGCTCCTGGTTGTAAAGCAGCACTTGCAGAAGATGCTGTTTTCTCCAAGGCTACGTTGAAGAGTTGCTTGTGTGATGAACTTTGTGGTAGTAATTCCATAAAAGTGCATGATTTTGCTCATTCACTAGTGCAGCAGAGTGAGTACACTTCATATAAAATCAAAGCTGTCCTTGAGACTCTGCATTCAAATTGTAAACTGAATAGTCGTAGCTCTGGTTTACTAAATTCTGCTGAAAGCCATAGAGGTTCACTACTATCTTCTGATGATTCATATATTGAAGATTGCGACTTAGATGCTAAGATTATGAAACACACAAGAAAATATTCACAGTTGACAACCGTAGGACCAATAAATGCTATAGTTTTTTCCCAATGGACTAGAATGTTGGACTTAGTTGAGGCATCATTGCAACAATCCCCTATACAATACAGGAGACTTGATGCGACGATGTCTCTGATTGCTAGAGACATATCTGTTAAAGATTTCAATACTGATCCCGAGGTAACTGTTATGCTGATGTCGCTGAAAGCAGGAAATCTTGGTTTGAATATTGTTGCTGTGTGTCATGTTATTCTTTTGGATCCGTGGTGGAATCCAACAAATGAAGATCGAGCTCATAGAATTGGACAGATTCGTCCTGTTACAGTGACACGGCTCACTATAAAAGATACAGTTGAAGACAGAATACTGGTTCTTTAG | 861 | 0.3937 | MILLILLGNNLETTSAICCACEDPPEDPVVTMRGHVFCYQCVSDYLNGDGNTCSAPGCKAALAEDAVFSKATLKSCLCDELCGSNSIKVHDFAHSLVQQSEYTSYKIKAVLETLHSNCKLNSRSSGLLNSAESHRGSLLSSDDSYIEDCDLDAKIMKHTRKYSQLTTVGPINAIVFSQWTRMLDLVEASLQQSPIQYRRLDATMSLIARDISVKDFNTDPEVTVMLMSLKAGNLGLNIVAVCHVILLDPWWNPTNEDRAHRIGQIRPVTVTRLTIKDTVEDRILVL* | 287 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ahy9g2622 | 286 | Pfam | Helicase conserved C-terminal domain | 172 | 263 | IPR001650 | - | |
| Ahy9g2622 | 286 | SMART | helicmild6 | 184 | 263 | IPR001650 | - | |
| Ahy9g2622 | 286 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 9 | 69 | IPR013083 | - | |
| Ahy9g2622 | 286 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 150 | 286 | IPR001650 | - | |
| Ahy9g2622 | 286 | PANTHER | TRANSCRIPTION TERMINATION FACTOR 2-RELATED | 5 | 286 | - | - | |
| Ahy9g2622 | 286 | Gene3D | - | 84 | 286 | IPR027417 | - | |
| Ahy9g2622 | 286 | CDD | SF2_C_SNF | 173 | 273 | - | - | |
| Ahy9g2622 | 286 | PANTHER | HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 | 5 | 286 | - | - | |
| Ahy9g2622 | 286 | SUPERFAMILY | RING/U-box | 14 | 62 | - | - | |
| Ahy9g2622 | 286 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 147 | 284 | IPR027417 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ahy9g2622 | Ahy-Chr9 | 115209718 | 115212975 | Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Ahy9g2622 | 16 | 286 | RAD5 or RAD16-like Gene Family | AT1G61140 | 49.643 | 1.87e-68 | 228 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ahy9g2622 | - | - | ahf:112712273 | 578.941 |