Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy9g2564 ATGATGGACTTCGATGAATATGAGTACTTAGAGAAAGCAGTTGAGAATCCCGAGCTTAGGAAGGAGAAGGAAGCCACTAATGGCAGGAGTGGAGGTTTCAAATCAGAAGAGAAAGGGTATAGTAGGAGTTCCAGGCATAAGGATGATCGTGATGGTGATGATGATAATGATAATGATGTGGATCACCGCTCTAAGCATTCAAAATCTGGCGATGGTTCTCGTGGTGATTACGATAAGCACAAGGAAAGAGGCTCGTCGCATCGTCACTCCCGGTCCAGAGATGGAAACAAGGAGAAGGATGAGCATAGAAGCTCTAGGAGCAGCAGGGATGGGAAGAGAGATAAGGACAGAGATGATGAGGACAAGTATGGAAGGGAGCGAGACAGAGAACGTGACCGTGAAAGGGACAGGGAGAAAGAGAGCTCACGGCGAAGCAGAAGTCAATCCGAAAGGCGTAAGAGTGATCCTGATGACAGAGAAAGAGAGAGGAGTCGTGACAGGGAGCATAGAGACAGTGAAAGGAGCCGGGATAAGGATTACAGAGACAGGGAAAGGGCAAGGGAATCCAGGGAACGGGATAGAGAAAGCAGAAGACATAAAGAGAAAAAGGAAGAGGCAGCAGAACCCGAGGTTGATCCTGAAAGAGATCAAAGAACTGTGTTCGCTTATCAGATTTCTCTGAAAGCAGATGAAAGAGATGTGTATGAGTTCTTCTCAAGGGCGGGCAAGGTGCGAGATGTTCGGTTAATTATGGACCGCAATTCAAGACGCTCTAAGGGTGTTGGGTATATTGAGTTCTATGATGTCATGTCTGTCCCCATGGCAATAGCACTTTCTGGCCAATTTCTTCTTGGTCAACCAGTGATGGTGAAGCCATCAGAAGCAGAAAAAAATTTGGTTCAGTCCACAACATCTGTTGCTACTGGACCTGCTGGAGTTATAGGCCCATATTCAGGGGGAGCAAGAAGGCTATATGTAGGCAATCTGCATTTCAATATGACCGAAACTGATCTTCGGACGGTGTTTGAAGCATTTGGTCAGGTTGAGCTTGTCCAGCTGCCTCTTGATGAAAGTGGGAACTGCAAAGGTTTTGGCTTTGTGCAGTTTGCACGCCTTGAAGATGCGAGAAATGCACAGAGCTTGAATGGTCAATTGGAAATTGGTGGCAGGACAATCAAGGTGTCCGCTATTACTGATCAATCTGGAATGCAAGAAGTTGGAGGAAATATTGGTGATCTTGATGATGATGAAGGTGGTGGCTTGTCCCTGAATGCCAGTTCTCGAGCATTACTCATGCAGAAGTTGAACCGCAGTGGCACTGCACCTAGCATGACTGGTTCAGCTGGTAATGCTGCTGTCAACGTCACTGGCCTTAATATGCCCGCAACAGTCGGTTCTCCCCTTTCTTCTATTCCTACGGTACCTGGATTGCCAGGTGGAGGCCTTCAAGTTCCCACACCTACCATTTCCTCTATTGATACAATTGGTGTTCCAAGTGAATGCTTACTGTTAAAGAATATGTTTGATCCCAAAGACGAGAAGGAACCGGATTTTGATTTGGATATTAAAGAAGATGTTGAGGCAGAATGCTCTAAGTTTGGGAAGTTAAAGCACATCTTTGTCGATAAAAATAGTGCTGGTTCCGTCTACTTACGGTTCGAAAATACTCAATCCGCAATAAGTGCACAGCGTGCCCTACATGGAAGATGGTTTGCTGGGAAGATGATCACTGCAAGCTTTATGGTTCCCCAGACATTTGAGGATAAATTCCCAGATAGCAGATGA 1785 0.4599 MMDFDEYEYLEKAVENPELRKEKEATNGRSGGFKSEEKGYSRSSRHKDDRDGDDDNDNDVDHRSKHSKSGDGSRGDYDKHKERGSSHRHSRSRDGNKEKDEHRSSRSSRDGKRDKDRDDEDKYGRERDRERDRERDREKESSRRSRSQSERRKSDPDDRERERSRDREHRDSERSRDKDYRDRERARESRERDRESRRHKEKKEEAAEPEVDPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQFLLGQPVMVKPSEAEKNLVQSTTSVATGPAGVIGPYSGGARRLYVGNLHFNMTETDLRTVFEAFGQVELVQLPLDESGNCKGFGFVQFARLEDARNAQSLNGQLEIGGRTIKVSAITDQSGMQEVGGNIGDLDDDEGGGLSLNASSRALLMQKLNRSGTAPSMTGSAGNAAVNVTGLNMPATVGSPLSSIPTVPGLPGGGLQVPTPTISSIDTIGVPSECLLLKNMFDPKDEKEPDFDLDIKEDVEAECSKFGKLKHIFVDKNSAGSVYLRFENTQSAISAQRALHGRWFAGKMITASFMVPQTFEDKFPDSR* 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy9g2564 594 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 413 518 IPR029123 -
Ahy9g2564 594 CDD RRM3_RBM39_like 499 581 - -
Ahy9g2564 594 PANTHER CC1-LIKE SPLICING FACTOR 2 590 - -
Ahy9g2564 594 SUPERFAMILY RNA-binding domain, RBD 322 585 IPR035979 GO:0003676
Ahy9g2564 594 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 228 287 IPR000504 GO:0003723
Ahy9g2564 594 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 524 576 IPR000504 GO:0003723
Ahy9g2564 594 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 324 393 IPR000504 GO:0003723
Ahy9g2564 594 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 322 399 IPR000504 GO:0003723
Ahy9g2564 594 SUPERFAMILY RNA-binding domain, RBD 213 299 IPR035979 GO:0003676
Ahy9g2564 594 MobiDBLite consensus disorder prediction 1 215 - -
Ahy9g2564 594 SMART rrm2_1 501 579 IPR003954 GO:0003676
Ahy9g2564 594 SMART rrm2_1 323 395 IPR003954 GO:0003676
Ahy9g2564 594 TIGRFAM SF-CC1: splicing factor, CC1-like family 103 592 IPR006509 GO:0003723|GO:0005634|GO:0006397
Ahy9g2564 594 Gene3D - 303 404 IPR012677 -
Ahy9g2564 594 Gene3D - 150 302 IPR012677 -
Ahy9g2564 594 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 218 295 IPR000504 GO:0003723
Ahy9g2564 594 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 2 590 - -
Ahy9g2564 594 CDD RRM1_RBM39_like 219 291 - -
Ahy9g2564 594 SMART rrm1_1 323 395 IPR000504 GO:0003723
Ahy9g2564 594 SMART rrm1_1 219 291 IPR000504 GO:0003723
Ahy9g2564 594 SMART rrm1_1 501 579 IPR000504 GO:0003723
Ahy9g2564 594 Coils Coil 185 205 - -
Ahy9g2564 594 Gene3D - 495 594 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy9g2564 Ahy-Chr9 114723313 114730411 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy9g2564 219 385 Eukaryotic Initiation Factors Gene Family AT4G34110 27.811 1.32e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy9g2564 K13091 - gmx:100789839 700.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g3066 19 153443536 153450627 Ahy9g2564 9 114723313 114730411 hybridization