Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy9g2553 ATGTCATCTCCACCAGGCCCCATTCACTTTTTCCAGATTGTTAATGAAACCAGCCTTCAAAATGGTGAATTGAGGATTCGCAGAAGTTTTGTAAGTGAACATTGGCAAGGAATATCAAGCCCGGTATTACTTGTGCTTCCTAATGGTTCCGAATGGAAGATGGACTGGGAAAAGCGTGATGCTGATGTTTGCTTTGTTCAAGGTTGGAAGAAATTTGCAGAGTTTTATTCTTTGGAAAAGGAGCAGGTTTTGATGTTCAAGTATGAAGGGAAGTCACGGTTCAATGTTATAATACTCGGTCGGAGTGGCTTGGAAAGGGAGTATCCTTTGTTGAATGGAACTCTTGAAGCTGAAGGGAGTGGTAACTCTAAAAGGCCAAACTCTCCGTTGCGAAATTCTCCTAAGAAGAGAAGAACCAACACAGAAGAAGAAGCTAGATTCAATGCATGTTCTCATAATGCAAGGCCAAGAGACAGAGATGGAAGGAGAATCTTCTCAAAATCTGAGGCTTCTAACAACGTGGAGGCACCAAAACATGCTGAAAGTAGTAGTGCTTTGGAGAGAGCCTGGGCCTTCAGTTCTCTGAATCCTTGGTTCTATCGCAGAATGAGACCAGCGTACATCAATAACTATCTTCTGTTCAGAGCAGAAGATTATGTAACAGAAGAAGAAAGAAAGGAGAATGAGTTTCTCAGTCTCTGGGTTACCGATGAGAGTAGACCATGGCATGCTAAGATCTCGAAGCATGATAGTAATGGACAGATAATGCTTACTACGGGTTGGAAGCAATTTGTAAGGGACAACAACCTGAAACTAAATGATGTTTGTGTTTTTGAGAAAACTAGAAATTCCGAAGGACTTTCATTTAGAGTTATTATCTACCGTGCCACGCAAGAATCAACCAATATTCCAGCTCAAGATGGAGCAGACCAAAGCAACCAAACCAATGTTAGAAACAGTTTTGCTGAAAGGGGCCATGAAGGAACTTCAAAAGAATACTCAAAAAATTACAAACGTCGCGGACGTGCCAGCAAATGGACTGAAGATCAGTTCACTATCACCTTAAAGCAAAGTCAGGTGAAAAGTACTGCGCACATACCTTATGGCTTTGCCAAAAAATATCTACAAAAGGCAAAAGCTTTGACACTGCAGATTGGGAACAGAATATGGGAGATTAAGCTAGACTATTATCCACATCATTGCTATGCCAGATTATCCTCGGGATGGCCCAAATTTGTTAAGGATTGTAATCTTAAGGAAGCAGATGAATGCACCTTTCAGCTGATAGATAGGGAGAACTTTGTATTTGATGTTCAACTGAATTCTAATTACTAG 1335 0.409 MSSPPGPIHFFQIVNETSLQNGELRIRRSFVSEHWQGISSPVLLVLPNGSEWKMDWEKRDADVCFVQGWKKFAEFYSLEKEQVLMFKYEGKSRFNVIILGRSGLEREYPLLNGTLEAEGSGNSKRPNSPLRNSPKKRRTNTEEEARFNACSHNARPRDRDGRRIFSKSEASNNVEAPKHAESSSALERAWAFSSLNPWFYRRMRPAYINNYLLFRAEDYVTEEERKENEFLSLWVTDESRPWHAKISKHDSNGQIMLTTGWKQFVRDNNLKLNDVCVFEKTRNSEGLSFRVIIYRATQESTNIPAQDGADQSNQTNVRNSFAERGHEGTSKEYSKNYKRRGRASKWTEDQFTITLKQSQVKSTAHIPYGFAKKYLQKAKALTLQIGNRIWEIKLDYYPHHCYARLSSGWPKFVKDCNLKEADECTFQLIDRENFVFDVQLNSNY* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy9g2553 444 SMART B3_2 351 442 IPR003340 GO:0003677
Ahy9g2553 444 SMART B3_2 10 102 IPR003340 GO:0003677
Ahy9g2553 444 SMART B3_2 191 297 IPR003340 GO:0003677
Ahy9g2553 444 SUPERFAMILY DNA-binding pseudobarrel domain 193 296 IPR015300 -
Ahy9g2553 444 CDD B3_DNA 351 440 IPR003340 GO:0003677
Ahy9g2553 444 Gene3D - 178 299 IPR015300 -
Ahy9g2553 444 Gene3D - 329 443 IPR015300 -
Ahy9g2553 444 SUPERFAMILY DNA-binding pseudobarrel domain 350 437 IPR015300 -
Ahy9g2553 444 Pfam B3 DNA binding domain 236 296 IPR003340 GO:0003677
Ahy9g2553 444 Pfam B3 DNA binding domain 14 98 IPR003340 GO:0003677
Ahy9g2553 444 Pfam B3 DNA binding domain 351 438 IPR003340 GO:0003677
Ahy9g2553 444 ProSiteProfiles B3 DNA-binding domain profile. 349 444 IPR003340 GO:0003677
Ahy9g2553 444 Gene3D - 6 103 IPR015300 -
Ahy9g2553 444 PANTHER B3 DOMAIN-CONTAINING 317 439 - -
Ahy9g2553 444 PANTHER B3 DOMAIN-CONTAINING 7 296 - -
Ahy9g2553 444 ProSiteProfiles B3 DNA-binding domain profile. 9 102 IPR003340 GO:0003677
Ahy9g2553 444 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 317 439 - -
Ahy9g2553 444 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 7 296 - -
Ahy9g2553 444 SUPERFAMILY DNA-binding pseudobarrel domain 3 103 IPR015300 -
Ahy9g2553 444 MobiDBLite consensus disorder prediction 135 162 - -
Ahy9g2553 444 MobiDBLite consensus disorder prediction 115 162 - -
Ahy9g2553 444 ProSiteProfiles B3 DNA-binding domain profile. 198 297 IPR003340 GO:0003677
Ahy9g2553 444 CDD B3_DNA 9 99 IPR003340 GO:0003677
Ahy9g2553 444 CDD B3_DNA 235 295 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy9g2553 Ahy-Chr9 114636753 114639344 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy9g2553 296 438 B3 DNA Binding Superfamily AT3G18990 26.712 8.48e-08 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ahy9g2553 B3 2.60E-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy9g2553 - - ahf:112712192 918.302
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g3078 19 153550371 153553024 Ahy9g2553 9 114636753 114639344 hybridization