Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy9g2550 ATGTCTTCTCATCTTCACCAAGGGAATGCTGTCATGTCTATTCTCTTCTTCAAGATTATACTCAAAACTAACCTTAAAAGTCTTAAAATACCCGACAAATTTGCACTGAAATATGGAAGTGGTTTGTCCAATCCAGTGTCCTTAAAGCCTCCAGATGGAACAAGGTGGAATGTGTGTTTGAGAAAAAAGAATGATCAAGTTTGGTTTGAAAAAGGTTGGAAAGAATTCACTCAAAAGTACTCTCTGAATCATGGATGCTTGGTTCTGTTTAAATACGAAGGAACTACTTCCCAATTTGATGTCATTATCATTGATGACGGTGCTTTAGAAATAGACTATTCTTCCTACAATGGAAATGATAACGATGATGTTTCAGTTCAGATTGTAAAGGAAATCCATCCATGCAAGAAGAACAAAAAAACCATGAGAGATGAGAAGGATGTGACTACTTCTTTGTCATTGAATTGGCCAAGGGAACCAAGAGCACGACAAGAAGCTAACAAATTCGTATCTAACAACCCTTTTTTTACTGTGCTCATAAAGCCTCCTCATATCACAGAATACCGACTGTGCATACCAGGTTTGGAAGGTTATGTGGATAATGGAGTGAAGAATGTGAAGCTTGAGTATGGGGATAGATCGTGGCCTGTGAAGATGCTTAATTGTAACAAAACCTATTCAAATCGCTTCCTTTCTGCTGGGTGGAACTTGTTTGCACAAGAGAATGAGTTGAAGCCTGGAGATGTTTGTGTCTTTGAACTTGTTAATATGCAAGATTTGGTCTTTAAGGTTCATGTTTTTGCTGCCCATCATGTTTAA 819 0.3785 MSSHLHQGNAVMSILFFKIILKTNLKSLKIPDKFALKYGSGLSNPVSLKPPDGTRWNVCLRKKNDQVWFEKGWKEFTQKYSLNHGCLVLFKYEGTTSQFDVIIIDDGALEIDYSSYNGNDNDDVSVQIVKEIHPCKKNKKTMRDEKDVTTSLSLNWPREPRARQEANKFVSNNPFFTVLIKPPHITEYRLCIPGLEGYVDNGVKNVKLEYGDRSWPVKMLNCNKTYSNRFLSAGWNLFAQENELKPGDVCVFELVNMQDLVFKVHVFAAHHV* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy9g2550 272 ProSiteProfiles B3 DNA-binding domain profile. 175 270 IPR003340 GO:0003677
Ahy9g2550 272 PANTHER B3 DOMAIN-CONTAINING 12 269 - -
Ahy9g2550 272 ProSiteProfiles B3 DNA-binding domain profile. 13 107 IPR003340 GO:0003677
Ahy9g2550 272 SMART B3_2 175 268 IPR003340 GO:0003677
Ahy9g2550 272 SMART B3_2 16 107 IPR003340 GO:0003677
Ahy9g2550 272 Gene3D - 12 107 IPR015300 -
Ahy9g2550 272 Pfam B3 DNA binding domain 24 99 IPR003340 GO:0003677
Ahy9g2550 272 Pfam B3 DNA binding domain 175 268 IPR003340 GO:0003677
Ahy9g2550 272 Gene3D - 157 271 IPR015300 -
Ahy9g2550 272 CDD B3_DNA 175 267 IPR003340 GO:0003677
Ahy9g2550 272 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 12 269 - -
Ahy9g2550 272 CDD B3_DNA 15 105 IPR003340 GO:0003677
Ahy9g2550 272 SUPERFAMILY DNA-binding pseudobarrel domain 15 105 IPR015300 -
Ahy9g2550 272 SUPERFAMILY DNA-binding pseudobarrel domain 171 268 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy9g2550 Ahy-Chr9 114613899 114615660 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy9g2550 161 267 B3 DNA Binding Superfamily AT3G18990 39.286 1.78e-14 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ahy9g2550 B3 1.30E-11 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g3081 19 153570610 153572477 Ahy9g2550 9 114613899 114615660 hybridization