Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy9g2549 ATGTCTTCTTCTTCTCAGTGGCGTGGCAAGGCTATAATCCCTATCCACTTCTCAGCTATTATCTTCAATAAAACTGATCTTCAGACTCTGAAAATATCAAGTAAATTTACAAGGACATATGGAGGTGGTTTGTTGAATCCAATGTTTTTGAAGCCTCCAGATGGCACCAAATGGGAAGTGAATTGGACTAGAAAAAATGATGATGAGGTTTGGTTCCAAAAGGGTTGGAACAAATTCACTGAAAACTACTCCTTAGATCATGGCCACTTGATTCTTTTCACCTATCATGGAAATTCACAACTTGATGTTCACATCTTTGACAAATCTGCCTCTGAAATACTCTATCCGGGGTTAAAGTTAAACACTACTCCTACTACTACTGCTTGTGATGATGAAAAGAACATCAAACTTGATCTCATGCACAATGATGATGACTCCATTGAGATTTTGAAGCCTTGTAAACACAAACGCAGCATGCTAGTGTTGGTTCCTCAACCTTGTAATAAAAGAATGAAAGATGAGAAGAAGAAGGTTGCTGAAAGAAGATCAAGTTGTTCATCATTGAATTGGCCAAAGCAAGAAAGAGCACAGGAAGTAGCTATGAACTTCGTGTCTGATAATCCTTTCTTCACAATGTTCATAACCCATATCCATCTAACACAATACAAAGCGGGCGTGCCAAACATGAAAGAGTATACTGATGAGGATGAGAAGGATGTGGAGCTGAAAATTGGGGAGAAATCGTGGAAAGTCAAACTGAGGCGTGGTAGCAACTCTTCAAATTGTCGGTACTTGGGTGGTGGATGGTCCTTGTTTGCAGATGAGAGTGAATTGCTTCCTGGAGATGTTTGTGTCTTTGAGCTCATCAACATTCATCCTTTGCAGTTTAGGGTTCATATTTTCAAAAAGCAGCAGAGTTAG 921 0.3952 MSSSSQWRGKAIIPIHFSAIIFNKTDLQTLKISSKFTRTYGGGLLNPMFLKPPDGTKWEVNWTRKNDDEVWFQKGWNKFTENYSLDHGHLILFTYHGNSQLDVHIFDKSASEILYPGLKLNTTPTTTACDDEKNIKLDLMHNDDDSIEILKPCKHKRSMLVLVPQPCNKRMKDEKKKVAERRSSCSSLNWPKQERAQEVAMNFVSDNPFFTMFITHIHLTQYKAGVPNMKEYTDEDEKDVELKIGEKSWKVKLRRGSNSSNCRYLGGGWSLFADESELLPGDVCVFELINIHPLQFRVHIFKKQQS* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy9g2549 306 SMART B3_2 22 109 IPR003340 GO:0003677
Ahy9g2549 306 SMART B3_2 209 304 IPR003340 GO:0003677
Ahy9g2549 306 Pfam B3 DNA binding domain 234 303 IPR003340 GO:0003677
Ahy9g2549 306 Pfam B3 DNA binding domain 27 108 IPR003340 GO:0003677
Ahy9g2549 306 SUPERFAMILY DNA-binding pseudobarrel domain 205 303 IPR015300 -
Ahy9g2549 306 PANTHER B3 DOMAIN-CONTAINING 13 303 - -
Ahy9g2549 306 Gene3D - 188 305 IPR015300 -
Ahy9g2549 306 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 13 303 - -
Ahy9g2549 306 ProSiteProfiles B3 DNA-binding domain profile. 209 304 IPR003340 GO:0003677
Ahy9g2549 306 ProSiteProfiles B3 DNA-binding domain profile. 15 109 IPR003340 GO:0003677
Ahy9g2549 306 SUPERFAMILY DNA-binding pseudobarrel domain 21 116 IPR015300 -
Ahy9g2549 306 CDD B3_DNA 238 302 IPR003340 GO:0003677
Ahy9g2549 306 CDD B3_DNA 30 107 IPR003340 GO:0003677
Ahy9g2549 306 Gene3D - 14 111 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy9g2549 Ahy-Chr9 114591402 114593086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy9g2549 17 302 B3 DNA Binding Superfamily AT3G18990 27.714 9.30e-24 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ahy9g2549 B3 5.00E-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy9g2549 - - aip:107616196 559.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g3083 19 153583946 153585225 Ahy9g2549 9 114591402 114593086 hybridization