Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy9g2472 ATGAAGGTTTTTGTAAAGACTCTGAAGGGCACGCACTTCGAAATTGAAGTGAAGCCCGATGACACGGTTACCGAAGTGAAGAAAAATATAGAAACTGTTCAAGGTGCAAATGTCTACCCTGCTGCACAGCAAATGCTTATTCATCAAGGCAAGGTTCTTAAGGATGGTACTACTTTGGAGGAAAACAAAGTAGCTGAAAACAGTTTCATTGTAATCATGCTTTCTAAGAGTAAGAGCACATCTGGTGAAGGATCTACTGCATCAACAGCACCTTCATCAAAGGCTCCACAGACTAGTGCAACTCCTACTCCTACCCCATCTGTGTCAGTAGCACCTCAAGCTGTTCCTGCTACTGCTGCACCGCCTGCGCCTTCGCCTTCACCTTCGCCTTCACCTGCACCTGCTGCACCTGCACCTGCTGCACCTGCACCTGCACCTGCACCTTCACCTGCTGCAGCTCCTACATCTACAGATACTGCTGTCAGGGTAGGGTCTGATATCTATGGGCAGGCAGCATCCAATCTGGTTGCCGGAAGCAACTTGGAGGGAACAATTCAGCAAATTCTTGATATGGGGGGTGGGAGCTGGGATAGGGACACAGTTATCCGTGCTCTTAGAGCTGCTTATAACAACCCTGAGAGAGCTGTTGAATATTTGTATACGGGTATCCCTGAGCAAGCTGAAGCTCCACCTGTGGCCCGAGTGCCTACAAGTGTACAACCTGCAAATCCACCAGCTGCTGCACCTCAGGCAGCTTCACCTCAAGCAGCACAACCAGCTCCTGTCACAACTAGTGGACCAAATGCTAATCCTCTAGACCTATTTCCCCAGGGTCTCCCCAATGTTGGTTCTGGTGCTGCTGGCGCCGGCTCTTTAGAATTTCTGCGCAACAGCCAACAGTTCCAAGCCTTGCGAGCTATGGTGCAGGCTAACCCACAAATATTGCAGCCTATGCTACAAGAGCTTGGCAAACAAAATCCTCATCTTATGAGATTGATTCGAGATCATCAAGCTGATTTCCTTCGACTGATAAATGAACCTGTGGAAGGTGGTGAGGGGAATTTATTTGGCCAGCTAGCTGCTGGCATGCCACAATCAGTAACTGTTACACCTGAAGAGCGCCAAGCAATTGAACGTCTTGAAGCAATGGGCTTTGATCGTGCACTTGTGTTGGAGGTGTATTTTGCTTGCAACAAGAACGAGGAATTGGCTGCCAACTACCTCTTAGATCACATGCACGAGTTTGACGAACAATAG 1257 0.4869 MKVFVKTLKGTHFEIEVKPDDTVTEVKKNIETVQGANVYPAAQQMLIHQGKVLKDGTTLEENKVAENSFIVIMLSKSKSTSGEGSTASTAPSSKAPQTSATPTPTPSVSVAPQAVPATAAPPAPSPSPSPSPAPAAPAPAAPAPAPAPSPAAAPTSTDTAVRVGSDIYGQAASNLVAGSNLEGTIQQILDMGGGSWDRDTVIRALRAAYNNPERAVEYLYTGIPEQAEAPPVARVPTSVQPANPPAAAPQAASPQAAQPAPVTTSGPNANPLDLFPQGLPNVGSGAAGAGSLEFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPVEGGEGNLFGQLAAGMPQSVTVTPEERQAIERLEAMGFDRALVLEVYFACNKNEELAANYLLDHMHEFDEQ* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy9g2472 418 Gene3D - 174 224 - -
Ahy9g2472 418 CDD UBA2_RAD23_plant 369 411 - -
Ahy9g2472 418 SUPERFAMILY UBA-like 352 416 IPR009060 GO:0005515
Ahy9g2472 418 MobiDBLite consensus disorder prediction 117 151 - -
Ahy9g2472 418 Gene3D - 1 80 - -
Ahy9g2472 418 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 179 222 IPR015940 -
Ahy9g2472 418 SUPERFAMILY UBA-like 178 230 IPR009060 GO:0005515
Ahy9g2472 418 Pfam UBA/TS-N domain 184 219 IPR015940 -
Ahy9g2472 418 Pfam UBA/TS-N domain 373 408 IPR015940 -
Ahy9g2472 418 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 417 - -
Ahy9g2472 418 PRINTS DNA repair protein Rad23 signature 399 414 IPR004806 GO:0006289
Ahy9g2472 418 PRINTS DNA repair protein Rad23 signature 318 340 IPR004806 GO:0006289
Ahy9g2472 418 PRINTS DNA repair protein Rad23 signature 367 383 IPR004806 GO:0006289
Ahy9g2472 418 PRINTS DNA repair protein Rad23 signature 384 398 IPR004806 GO:0006289
Ahy9g2472 418 CDD UBA1_Rad23_plant 175 224 - -
Ahy9g2472 418 Gene3D - 283 348 IPR036353 GO:0003684|GO:0006289|GO:0043161
Ahy9g2472 418 TIGRFAM rad23: UV excision repair protein Rad23 1 416 IPR004806 GO:0006289
Ahy9g2472 418 PANTHER UV EXCISION REPAIR PROTEIN RAD23-RELATED 1 417 - -
Ahy9g2472 418 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Ahy9g2472 418 Pfam XPC-binding domain 292 347 IPR015360 GO:0003684|GO:0006289|GO:0043161
Ahy9g2472 418 MobiDBLite consensus disorder prediction 235 269 - -
Ahy9g2472 418 SMART ubq_7 1 75 IPR000626 GO:0005515
Ahy9g2472 418 MobiDBLite consensus disorder prediction 77 158 - -
Ahy9g2472 418 SUPERFAMILY Ubiquitin-like 1 80 IPR029071 -
Ahy9g2472 418 SMART uba_6 181 221 IPR015940 -
Ahy9g2472 418 SMART uba_6 373 410 IPR015940 -
Ahy9g2472 418 Gene3D - 365 412 - -
Ahy9g2472 418 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 370 411 IPR015940 -
Ahy9g2472 418 MobiDBLite consensus disorder prediction 77 112 - -
Ahy9g2472 418 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Ahy9g2472 418 CDD Ubl_Rad23 1 74 - -
Ahy9g2472 418 SUPERFAMILY XPC-binding domain 289 354 IPR036353 GO:0003684|GO:0006289|GO:0043161
Ahy9g2472 418 SMART CBM 290 333 IPR006636 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy9g2472 Ahy-Chr9 113824652 113829015 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy9g2472 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 39.189 3.52e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy9g2472 K10839 - gmx:100814162 566.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g3156 19 154499120 154503340 Ahy9g2472 9 113824652 113829015 hybridization