Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy9g2387 ATGAAGGCACCTATTGAGATGGTTGTCCTTGATGAAGAGGGAGATACAATTCAATGCACTGTAAAAGACATATTTGTTCTTATCTTCGAGGGCTTACTCGCTGAGGGCAACGTGTACGTGGTCACTAATTTTGGAGTTGCTTTGAATACCATCAAGTTCAAGCTTACTAGACACGAATTTAGGATCCATTTCAAGAGGGACACGATTGTGCGTCTGGTACAGGATTCTTCAGTTCCATTGAACGGATTCAATTTTGTTCCGTTCAAAACAATTCAATCAGAGTCTAAAGAAGATGATTATTTAGTTGATGTGATAGGTCAGCTTGCTTCTAAGGATAACTTGGTCAAATTCACACGGGATGGGAAGCCGTCAAGTTATATCACCATAGAACTTGATAATCTTGAGGGTGGACATAAATTAAAGGTAACGTTGTGGCAGTCTTTTGCTTTTGAATTACTCAAATATCTAGAGGAACACCCGTGTCTTACCTATGTGGTTATTCTCCAAATGGGCAAGATGAAATTTTATAGCGGGGTCATGGGTGTATCCAACACAAACTACAATTCGAAACTATTTATCAATGTTGAGTTTCCAGCTGCCAAGGATTTCTTTACGAGGGTGAACAAATTGGATCCTGTTGACGGACAAGGCATAATGCCGCTGGTCTGTGATCAACCTGTTTCAGATGAGGAAGATTTTTTGCGTCTATCAGTCTACAAAACAATTGCAGAGATAAAGGAGCATAATCAGGATGCTGTATTTGTTACAGCCGGGACGATTAAAGAAGTTGAGACTGAATTTGGTTGGTGGTACAAAGGATGTAAGAAGTGTCGTCGTGACTTGAGGGAACTTGAGAAAAGATATTTCTGTCCCAATTGCATTAGAGACTACGAGTTCTTTGAGCCAAGGTACATCATCCACATAAGGGTGATAGACCACACTGATGCTGCCTCTTTTGTTTTGTTCGATGGAGAAGCTGCAAAGTTTCTTAGAGTTTCTGCTAATGACCTTAGGCAGTCTTGTGTGACTAAGGGTGTTGAGAAAAATTCCTGTCCTGAAGAAATTAATAAGTTTAGGGATATTAAGTTCATCTTCAAAGTGCAACTCAAGATGAGGAATCTGAACTATTATGAACCATATGTGATTCATGTGCTGAGAATGACTAATGAGAATTCTCTGATCTCTGCCTTCCTGGATAAATACAATCCTGACACTGGCCTTTTGTCCCATGAAAATTCTGAACTATTGAGTTTGTCTACTGGTCCATACGACACTTCTAAGGCTTGTGAGAGTGAGCCAACTCCATCACCTGCAGTTGATGAGAAACATAATTCTAAGATTCTCGGAGCTAAGAAACATATGAAGAGATTGGAGAGGAGTGGGTTGTGGTGGAGGACTAAATCAACATGCCTCTACACAGTTCGATTTAAAATATAG 1437 0.4001 MKAPIEMVVLDEEGDTIQCTVKDIFVLIFEGLLAEGNVYVVTNFGVALNTIKFKLTRHEFRIHFKRDTIVRLVQDSSVPLNGFNFVPFKTIQSESKEDDYLVDVIGQLASKDNLVKFTRDGKPSSYITIELDNLEGGHKLKVTLWQSFAFELLKYLEEHPCLTYVVILQMGKMKFYSGVMGVSNTNYNSKLFINVEFPAAKDFFTRVNKLDPVDGQGIMPLVCDQPVSDEEDFLRLSVYKTIAEIKEHNQDAVFVTAGTIKEVETEFGWWYKGCKKCRRDLRELEKRYFCPNCIRDYEFFEPRYIIHIRVIDHTDAASFVLFDGEAAKFLRVSANDLRQSCVTKGVEKNSCPEEINKFRDIKFIFKVQLKMRNLNYYEPYVIHVLRMTNENSLISAFLDKYNPDTGLLSHENSELLSLSTGPYDTSKACESEPTPSPAVDEKHNSKILGAKKHMKRLERSGLWWRTKSTCLYTVRFKI* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy9g2387 478 Pfam Replication factor-A C terminal domain 254 375 IPR013955 -
Ahy9g2387 478 Gene3D - 77 211 IPR012340 -
Ahy9g2387 478 CDD RPA1_DBD_A_like 5 70 - -
Ahy9g2387 478 Gene3D - 232 400 IPR012340 -
Ahy9g2387 478 SUPERFAMILY Nucleic acid-binding proteins 239 388 IPR012340 -
Ahy9g2387 478 PANTHER REPLICATION FACTOR A 1, RFA1 11 402 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ahy9g2387 478 CDD RPA1_DBD_C 242 376 IPR013955 -
Ahy9g2387 478 Gene3D - 2 76 IPR012340 -
Ahy9g2387 478 SUPERFAMILY Nucleic acid-binding proteins 5 75 IPR012340 -
Ahy9g2387 478 Pfam Domain of unknown function DUF223 6 101 IPR003871 -
Ahy9g2387 478 CDD RPA1_DBD_B_like 103 207 - -
Ahy9g2387 478 SUPERFAMILY Nucleic acid-binding proteins 83 207 IPR012340 -
Ahy9g2387 478 PANTHER BNAC07G49340D PROTEIN 11 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy9g2387 Ahy-Chr9 112708565 112713938 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy9g2387 11 337 Core DNA Replication Machinery Family AT5G08020 25.073 6.56e-18 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy9g2387 - - adu:107477146 862.833