Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy9g2276 ATGTCTACTGCTAGGAAAAGCCGTGGTCGCCAAAAGATTGAGATGAAGAAGATGAGCAATGAGAGCAACCTTCAAGTCACATTTTCCAAGCGCCGTGGTGGATTGTTTAACAAAGCTAGTGAACTTTGCACTCTGTGTGGTGCTGAAGTGGCAATCATCGTGTTTTCCCCAGGACAGAAGGTCTTCTCCTTTGGCCACCCAAGCGTTCAAACAATCATAGATCGTTACCTCATGCATGCGTCCATGCATAACTCTGGCACCATGCAGTTCATCGAGGCCCAGCGAAGTGCTAGTGTGTGTGAGCTGAACGAACAGCTCACACGAATTAGCAACCAACTGGATGTCGAGAAAAAACGTAGCGATGAACTAAGCCGCCTTCAGAAAACTGTCATGACACAGTTCTGGTGGGCTTTGTCCATTGAAAATATGGACAAGACCCAACTCAACCAACTGAAGGCGGCTTTAGAAAAACTCAAGAAGAGTGTTATGTATTATGCTGAAAAGCTCCATATTCAAGGCATTGTTGCTAACCCTCCTCAGCCACTCCTTGGTTTGCCATCTTCAAGTGATGTGGTGCATCACCAACCTCCTTTCCCACCACCAACTCATCATGTGCCTCAACTATTTGCGTCCCATATTCGTCAACCTCTGATGCTTAACGGCGAAAACCGTTTGATGCATAATCCCATGTTTGCTGATTGGAGCATGTTGCACCAACATGGTTTTAACATCAACACTGGTATGGGAGGGTTTGGAAATATGGGTGGATTGTTTTGA 777 0.4595 MSTARKSRGRQKIEMKKMSNESNLQVTFSKRRGGLFNKASELCTLCGAEVAIIVFSPGQKVFSFGHPSVQTIIDRYLMHASMHNSGTMQFIEAQRSASVCELNEQLTRISNQLDVEKKRSDELSRLQKTVMTQFWWALSIENMDKTQLNQLKAALEKLKKSVMYYAEKLHIQGIVANPPQPLLGLPSSSDVVHHQPPFPPPTHHVPQLFASHIRQPLMLNGENRLMHNPMFADWSMLHQHGFNINTGMGGFGNMGGLF* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy9g2276 258 PANTHER MADS BOX PROTEIN 7 178 - -
Ahy9g2276 258 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Ahy9g2276 258 Gene3D - 88 172 - -
Ahy9g2276 258 Coils Coil 148 168 - -
Ahy9g2276 258 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Ahy9g2276 258 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Ahy9g2276 258 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Ahy9g2276 258 SUPERFAMILY SRF-like 9 84 IPR036879 GO:0003677|GO:0046983
Ahy9g2276 258 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 178 - -
Ahy9g2276 258 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Ahy9g2276 258 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Ahy9g2276 258 Gene3D - 20 87 IPR036879 GO:0003677|GO:0046983
Ahy9g2276 258 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy9g2276 Ahy-Chr9 111758516 111759356 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy9g2276 4 189 Type I MADS-box Gene Family AT5G60440 51.323 2.71e-57 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Ahy9g2276 SRF-TF 1.10E-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy9g2276 - - aip:107616132 446.817
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g3356 19 156475688 156476761 Ahy9g2276 9 111758516 111759356 hybridization