Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy9g2272 ATGGAGATGTTGAAGCAGAAAAAGAAAACAACAGGGAGGAAGAGGATTGAGATCAAGAAGCTTGAGAAAGAAGCAAACAAGCAAGTCACCTTCTCAAAGCGGCGAGCCGGGATGTTTAAGAAAGCCAGTGAGCTATGCATATTATGCAATGCTCACGTTGCCATTATAGTGTTCTCGCCGGCCGACAAGTTGTTCTGCTTTGGAGAACCCAGCACGGAGGCTGTGGTGGAGCGGTACCTGAAAGGAGCGCCAGATTTTGAGCCAATGAAGTCCTCCGAAAGGAAGAAGCCGGTGTCATGCGAAGAGCATAACAGAAAATACGAAGAGGCGATGAAGGCGTTGGAGTTGGAAAAGAAGAACAAGGCTGATGTTGAAGGTTTTGCTAAGGTTTGGGGGAGAGGGGAATGGTGGAATGAAGAGATTCATGAGATGAGTGTTGAGCAGTTGGAGCAGTTTTTGGTAGCCATTTATGAATTGAGGAGTAGGCTTCTTCAAAGGGCTGCTGAAATCATGATGATGCATGGAATGTTATAG 534 0.4644 MEMLKQKKKTTGRKRIEIKKLEKEANKQVTFSKRRAGMFKKASELCILCNAHVAIIVFSPADKLFCFGEPSTEAVVERYLKGAPDFEPMKSSERKKPVSCEEHNRKYEEAMKALELEKKNKADVEGFAKVWGRGEWWNEEIHEMSVEQLEQFLVAIYELRSRLLQRAAEIMMMHGML* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy9g2272 177 Coils Coil 100 124 - -
Ahy9g2272 177 Gene3D - 24 89 IPR036879 GO:0003677|GO:0046983
Ahy9g2272 177 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 21 67 IPR002100 GO:0003677|GO:0046983
Ahy9g2272 177 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
Ahy9g2272 177 PANTHER MADS BOX PROTEIN 8 173 - -
Ahy9g2272 177 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
Ahy9g2272 177 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 8 173 - -
Ahy9g2272 177 CDD MADS_MEF2_like 12 82 IPR033896 GO:0000977|GO:0045944
Ahy9g2272 177 SUPERFAMILY SRF-like 12 81 IPR036879 GO:0003677|GO:0046983
Ahy9g2272 177 Coils Coil 4 24 - -
Ahy9g2272 177 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
Ahy9g2272 177 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
Ahy9g2272 177 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy9g2272 Ahy-Chr9 111686020 111686594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy9g2272 8 152 Type I MADS-box Gene Family AT5G60440 40.667 5.31e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Ahy9g2272 SRF-TF 5.10E-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy9g2272 - - gmx:100814979 214.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g3360 19 156506151 156506942 Ahy9g2272 9 111686020 111686594 hybridization
Ahy5g1321 5 35857849 35858849 Ahy9g2272 9 111686020 111686594 PCT
Ahy9g2272 9 111686020 111686594 Ahy5g1321 5 35857849 35858849 PCT