Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ahy9g2237 | ATGGCAACAGCACAACAAGAATCAGGATCAGGATCAGAATCAGCCGTTGCAGTTAACGGCGTTGAAGACTCCTACTTCTCAGCTCTCTTTGATGATGAAGGTAACCTCGTCCCCATCTCCGATGACAAGTACGCTCATGAATTGCAGTTACAAGAGACTATCATGTCCTCCTTCATCGCTTCTCAAAGCACCATCGAAGGCTCATCGTCATCAAAAACCGTTCGTTGCCTTCCATCTTCATCAACACCTTCGTCATCACGACCAGTCTTTGTTGTCCCCAAAACCGAGTACATAGAGCTTCTGGATGACGACGAAATGCTTATCGTATGTGAGATTTGTGCAGAAACCAAAGGGACTGATCAGATGTTCAGGAACAAGAAATGTGATCACTCCTTCTGCTCTGACTGTGTCACCAAGCATGTGGCCACAAAGATCCAAGAGAGCTTAACGATTGTTCCTTGCCCCGGATTGAACTGCAAGGGCGTGATGGAGCTTGATTCCTGCAGGCCCATGCTCCCAAAAGAGGTTCTTGATAGGTGGGACGATGCACTCTGTGAGGCCCTGTTTCTTGCGGTTCCGAAATTCTATTGCCCCTTTAGGGACTGTTCTGCAATGCTGCTTGACGAGAATGAGGGGGGTGAAGGGATTATCAGGGAAGCTGAGTGCCCCTTTTGCCACAGGCTCTTCTGTGCCAGGTGTTGTGTTCCATGGCACCCTGGGGTTGAGTGTAACGTGTTGCAGTCACTGAATGAGGATGAGAGAGGGAGGGAGGATCTTCTTCTTAGGGACCTTGCTGCTCAAAAGAAATGGAATAGGTGTCCCAGATGCAAGTTCTATGTGGAGAAGACTGAAGGGTGCTTGCATATTACATGCAGGTGCCGATTCGAGTTTTGCTATGCTTGTGGTGAACCTTGGAGTAGCACTCATGGTGGATGCCAAAGGAATTAG | 948 | 0.4863 | MATAQQESGSGSESAVAVNGVEDSYFSALFDDEGNLVPISDDKYAHELQLQETIMSSFIASQSTIEGSSSSKTVRCLPSSSTPSSSRPVFVVPKTEYIELLDDDEMLIVCEICAETKGTDQMFRNKKCDHSFCSDCVTKHVATKIQESLTIVPCPGLNCKGVMELDSCRPMLPKEVLDRWDDALCEALFLAVPKFYCPFRDCSAMLLDENEGGEGIIREAECPFCHRLFCARCCVPWHPGVECNVLQSLNEDERGREDLLLRDLAAQKKWNRCPRCKFYVEKTEGCLHITCRCRFEFCYACGEPWSSTHGGCQRN* | 316 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ahy9g2237 | 315 | SUPERFAMILY | RING/U-box | 107 | 187 | - | - | |
Ahy9g2237 | 315 | SMART | ibrneu5 | 178 | 243 | IPR002867 | - | |
Ahy9g2237 | 315 | SMART | ibrneu5 | 253 | 312 | IPR002867 | - | |
Ahy9g2237 | 315 | Gene3D | - | 239 | 315 | - | - | |
Ahy9g2237 | 315 | SUPERFAMILY | RING/U-box | 254 | 313 | - | - | |
Ahy9g2237 | 315 | Pfam | Zinc finger, C3HC4 type (RING finger) | 110 | 155 | IPR018957 | GO:0046872 | |
Ahy9g2237 | 315 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 106 | 188 | IPR013083 | - | |
Ahy9g2237 | 315 | ProSiteProfiles | TRIAD supradomain profile. | 106 | 315 | IPR044066 | - | |
Ahy9g2237 | 315 | SUPERFAMILY | RING/U-box | 182 | 247 | - | - | |
Ahy9g2237 | 315 | ProSiteProfiles | Zinc finger RING-type profile. | 110 | 155 | IPR001841 | - | |
Ahy9g2237 | 315 | ProSitePatterns | Zinc finger RING-type signature. | 128 | 137 | IPR017907 | - | |
Ahy9g2237 | 315 | Pfam | IBR domain, a half RING-finger domain | 195 | 243 | IPR002867 | - | |
Ahy9g2237 | 315 | Pfam | IBR domain, a half RING-finger domain | 262 | 312 | IPR002867 | - | |
Ahy9g2237 | 315 | PANTHER | RBR-TYPE E3 UBIQUITIN TRANSFERASE | 33 | 303 | - | - | |
Ahy9g2237 | 315 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 33 | 303 | IPR031127 | GO:0004842|GO:0016567 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ahy9g2237 | Ahy-Chr9 | 111356716 | 111358392 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ahy9g2237 | 110 | 304 | C3H Transcription Factor Family | AT2G19610 | 25.743 | 4.68e-15 | 73.6 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ahy9g2237 | K11975 | - | qsu:112001859 | 358.992 |