Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy9g2217 ATGGTTATGGCTCCATTCAAGGAGGAGCAGCCTCAGCCACCGCCCATCGACCACGCCACCACCCTCATCTGTGCTCTTAACTTCCTCTCCCGTGATCTCCCTCTCCCTCCCCACCTCCTCAGTTCTGTTTCTACCATCTATCACTCTCACCCTTCTTCGCAGAACCAGCTCCAAGATGATATAGGGAATTCTAGTGAAAATTTAATTACGGACCTTGAAGGTGCATTGTTTAGGCAACGCTCTTCGGGTTCCGAATTGGAGAGAGCAAGGGAAAGCCGTTATCAAAATCGGATACAGCATCGATTAAATGAACTTGAAGGATTGCCTTCAACAAGGGGAGAGGATTTGCAAACAAAGTGCCTGCTTGAACTTTATGGTCTAAAGCTACGAGAGTTGCATTCGAAGGTTCGGTCTGATGTGAGTTCTGAGTACTGGCTGAATGTTAAATGTGCATACCCCGATAGGCAATTGTTTGATTGGGGCATGATGAGGTTGCAGCGTCCGCCATATGGTGTTGGAGATCCCTTTGCCATGGATGCTGATGATCAAATAAGGAAAAAAAGGGATGCTGAGAGACTATCGAGATTAGAAGAGGAGGAAAAAACTCATATAGAAACTAGAAAAAGAAAATTTTTTGCAGAAATACTCAATACCGTCCGTGAGTTTCAATTGCAAATTCAAGCTGCTGTGAAGCGGAGAAAACAGAGGAATGATGGTATTCAGGCATGGCATGGAAGGCAAAGGCAACGTGCCACACGGGCTGAGAAATTAAGGTTCCAAGCATTAAAAGCTGATGATCAAGAAGCTTACATGAGAATGGTGAAGGAGAGTAAGAATGAAAGATTAACCACGCTTCTTGAAGAAACCAATAAACTACTAGTAAATTTAGGAGCTGCTGTTCAACGTCAAAAGGACTCCAAACATTCAGATGGTATAGAACCCTTGGAAGATTCTGAAGTTGATTTACCTGAGTCAGACGCTTCTAAGAATGAAAAGGAATCACCTCTTGATGAAGAGATGGATATGATAGATTCTGATCATAATGGTGACACTAGTGATTTACTCGAAGGTCAGCGGCAATACAATTCTGCCATACATTCGATTCAAGAAAAGGTTACTGAGCAACCATCTATTCTTCAAGGTGGAGAATTAAGACCATATCAGATAGAAGGGCTCCAGTGGATGCTTTCTTTGTTTAATAACAACTTAAATGGAATTTTGGCTGATGAAATGGGTCTTGGGAAGACAATACAAACAATTTCGTTAATAGCACATCTTATGGAGCACAAGGGTGTTACTGGTCCCCATTTGATTGTTGCTCCAAAGGCTGTTCTGCCAAATTGGATGAATGAATTCTCAACATGGGTTCCAAGCATAACAACTATTCTTTATGATGGACGGTTGGATGAGAGGAAAGCAATGAAGGATGATTTGTTAGGGGAGAGGAAATTTAATGTTCTGCTAACACACTATGATCTTATAATGAGAGATAAAGCAATTCTCAAGAAAATTCACTGGATCTACCTAATTGTGGATGAAGGACATCGGTTGAAGAATCATGAATCTGCTCTAGCAAGGACACTGGAAGCCGGCTATCACATTCAACGCAGACTCCTGTTAACTGGCACCCCAATTCAAAACAGCTTGCAGGAGTTGTGGTCCCTGCTTAATTTTCTCCTTCCAAACATTTTCAACTCTGTTCAGAATTTCGAGGACTGGTTTAATGCCCCTTTTGCTGATCGAGTTGATGTCTCTTTAACAGATGAAGAACAACTTTTGATTATTCGACGTCTACATCAAGTAATAAGACCCTTCATATTAAGAAGAAAAAAGGATGAGGTGGAAAAATTTCTTCCCTCGAAATCTCAGGTCATACTCAAATGTGATATGTCAGCCTGGCAGAAAGTATATTATCAACAAGTCACTGACGTAGGCAGAGTTGGCTTAGACAATGGTTCTGGAAAATCAAAGAGCTTGCAGAACTTAACAATGCAACTCAGAAAGTGTTGCAACCATCCATACCTCTTTGTGGGAGATTATGATATGTATAACCGTAAGGAGGAGATTGTCAGAGCATCAGGTAAGTTTGAACTTCTTGACCGTTTGCTCCCAAAACTTCGCAGAGCAGGCCACAGAGTCCTCCTTTTTTCACAAATGACTAGACTCATGGATATTCTCGAGATTTATTTGAGACTTCATGATTTTAAGTATCTAAGACTTGATGGCTCGACAAAAACGGAGGAAAGAGGCACTTTATTACGAAAATTCAATGCTCCTGACTCCCCATACTTCATGTTTCTCTTGAGCACCCGTGCTGGAGGTCTTGGTTTGAACTTGCAAACGGCAGATACTGTTATAATATTTGACAGTGATTGGAACCCCCAAATGGATCAACAAGCAGAGGATCGAGCACATCGCATTGGTCAAAAGAAAGAAGTTAGAGTTTTCGTGTTGGTTAGTGTAGGATCAATTGAAGAGGTGATTTTAGAGCGTGCAAAACAAAAGATGGGCATTGATGCAAAAGTCATCCAGGCAGGACTTTTCAACACAACTTCGACAGCTCAGGACAGAAGAGAAATGCTAGAGGAGATTATGCGTAGAGGTACAAGTTCACTTGGGACAGATGTACCTAGTGAGAGAGAAATTAACCGCCTCGCAGCCCGATCAGATGAGGAATTTTGGCTATTTGAAAAAATGGATGAAGAGAGAAGACTAAAGGAAAATTACAGATCTCGTTTAATGGACGAGCATGAATTGCCAGATTGGGTGTACTCTCCCCTTCATAACAAGGATGAAAAGCTCAAAGATTTCAACAATGGCAGTGCTACTGGAAAGCGTAAAAGAAAAGAAGTTGTTTATGCAGATACATTAAGTGATCTTCAATGGATGAAGGCCGTGGAGAACGGAGAAGATCTATCAAGGCTTTCAGTAAGGGGGAAGAGAAGAGACCACCTCTCATCTGACAACGCAGCACAAGCCAGTGACAATTCAGGGGCCGAAGAAAGGTTCTTGGAACTCCGCGCTGAGAGTGTCCACATGGCAAATGACAGAACAAGTGAAGATAGTTTCCATGTGACCCCTGCCTCAAAGAAACCCAAGCTTGAAGGCGCAAATTCCCATAGGCATGCATACGAGGATGTCAAAGGAAGTGGCTTGAACCAGCATGTGTTATCATGGAACACTCACAGAAAGAAGAGATCAAGTTATGGTCAGAGTTCATCATCTGATACCAAAGGACAGAGTTCAAATGGAAGAGCTAGCTGGAACTGA 3270 0.4217 MVMAPFKEEQPQPPPIDHATTLICALNFLSRDLPLPPHLLSSVSTIYHSHPSSQNQLQDDIGNSSENLITDLEGALFRQRSSGSELERARESRYQNRIQHRLNELEGLPSTRGEDLQTKCLLELYGLKLRELHSKVRSDVSSEYWLNVKCAYPDRQLFDWGMMRLQRPPYGVGDPFAMDADDQIRKKRDAERLSRLEEEEKTHIETRKRKFFAEILNTVREFQLQIQAAVKRRKQRNDGIQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTTLLEETNKLLVNLGAAVQRQKDSKHSDGIEPLEDSEVDLPESDASKNEKESPLDEEMDMIDSDHNGDTSDLLEGQRQYNSAIHSIQEKVTEQPSILQGGELRPYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAHLMEHKGVTGPHLIVAPKAVLPNWMNEFSTWVPSITTILYDGRLDERKAMKDDLLGERKFNVLLTHYDLIMRDKAILKKIHWIYLIVDEGHRLKNHESALARTLEAGYHIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKFLPSKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGDYDMYNRKEEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDILEIYLRLHDFKYLRLDGSTKTEERGTLLRKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRLKENYRSRLMDEHELPDWVYSPLHNKDEKLKDFNNGSATGKRKRKEVVYADTLSDLQWMKAVENGEDLSRLSVRGKRRDHLSSDNAAQASDNSGAEERFLELRAESVHMANDRTSEDSFHVTPASKKPKLEGANSHRHAYEDVKGSGLNQHVLSWNTHRKKRSSYGQSSSSDTKGQSSNGRASWN* 1090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy9g2217 1089 Gene3D - 615 912 IPR027417 -
Ahy9g2217 1089 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 611 862 IPR027417 -
Ahy9g2217 1089 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 360 609 IPR027417 -
Ahy9g2217 1089 Gene3D - 352 608 IPR038718 -
Ahy9g2217 1089 MobiDBLite consensus disorder prediction 1014 1048 - -
Ahy9g2217 1089 MobiDBLite consensus disorder prediction 303 350 - -
Ahy9g2217 1089 SMART ultradead3 380 573 IPR014001 -
Ahy9g2217 1089 MobiDBLite consensus disorder prediction 1014 1089 - -
Ahy9g2217 1089 MobiDBLite consensus disorder prediction 322 350 - -
Ahy9g2217 1089 Pfam Helicase conserved C-terminal domain 695 808 IPR001650 -
Ahy9g2217 1089 CDD SF2_C_SNF 686 819 - -
Ahy9g2217 1089 Pfam SNF2-related domain 387 675 IPR000330 GO:0005524|GO:0140658
Ahy9g2217 1089 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 698 865 IPR001650 -
Ahy9g2217 1089 MobiDBLite consensus disorder prediction 977 999 - -
Ahy9g2217 1089 MobiDBLite consensus disorder prediction 1053 1089 - -
Ahy9g2217 1089 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 396 562 IPR014001 -
Ahy9g2217 1089 SMART helicmild6 724 808 IPR001650 -
Ahy9g2217 1089 Pfam Snf2-ATP coupling, chromatin remodelling complex 903 963 IPR029295 GO:0042393
Ahy9g2217 1089 SMART SnAC_2 901 963 IPR029295 GO:0042393
Ahy9g2217 1089 PANTHER ATP-DEPENDENT HELICASE BRM 16 1047 - -
Ahy9g2217 1089 PANTHER SNF2/RAD54 HELICASE FAMILY 16 1047 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy9g2217 Ahy-Chr9 111118793 111126562 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy9g2217 691 836 RAD5 or RAD16-like Gene Family AT5G43530 37.333 2.93e-21 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ahy9g2217 SNF2_N 4.40E-69 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy9g2217 - - gmx:100786280 1823.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g3417 19 156939073 156946801 Ahy9g2217 9 111118793 111126562 hybridization