Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy9g2133 ATGGGGACCCCCAACGGGGATGTGAGGAAGAAGGAGGAGGAGGAGGAGGCTAAGTTGATGGAACAGGAATACCAAGACAAGAAAGAGGAGGAGGAGGAAGAGGAGGAGGATCCCAATGCAGTTTGGAGGTTTAGGATATCGGAGCCGTTGAAGGAGACGCTGAAGGGGAAGGGAATAGAGTCACTGTTTCCGATTCAGGCCATCACCTTTGATACCATTCTTGATGGCTCCGATTTGGTTGGCCGTGCTCGAACCGGTCAGGGAAAAACTCTGGCCTTTGTGTTGCCCATATTAGAGTCTTTGATAAACGGTATAGCCAAAGCTTCAAGAAAGACTGGTTATAGAAGGCCTCCAAGCGTTCTGGTTCTTTTACCAACAAGGGAATTGGCATCTCAGGTTCACTCTGACTTTGAACTTTATGGTGGCGCCGTCGGATTAACATCTTGCTGTTTATATGGTGGAGCTCCATATCAGAGCCAAGAAATTAAGCTCAAGAGAGGTGTTGATATTGTTGTTGGCACACCAGGCCGGATTAAGGATCATATAGAGAGGGAAAATATTGATCTAAGCCAGCTTAGATTTCGCGTCCTGGATGAAGCAGATGAGATGCTGAGGATGGGTTTTGTTGAAGATGTTGAACTTATTCTTGGTAAGGTAGAGAACATTAGTAAAGTCCAGACACTTCTATTCAGTGCTACTTTGCCAGACTGGGTTAAGCATATTGCTGCAAAATTTCTGAAGCCAGATAAGAAGACAGCTGACCTTGTTGGAAATACAAAAATGAAGGCAAGCACCAATGTTAGGCATATTGTTCTTCCCTGCACTACTTCTGCCAGGTCCCGCCTTATTCCGGACATCATTCGCTGTTATAGCAGCGGAGGACGGACAATTATATTTACTGAGACAAAGGAGTCTGCTTCACAACTTGCAGGTTTCTTGCCTGGAGCAAGAGCTCTCCATGGAGACATACAGCAGGCGCAACGTGAGGTTACATTGTCTGGCTTCAGGTCTGGCAAATTCATGACATTAGTTGCTACAAATGTGGCAGCTCGAGGTCTGGATATTAATGATGTTCAATTAATTATCCAGTGTGAACCGCCAAGGGATGTAGAAGCCTATATCCATCGTTCAGGGCGCACGGGACGAGCAGGTAATAGTGGAGTTGCTGTTATGCTTTATGATCCAAGGAGGTCAAGTATATCCAAAATCGAAAGAGAATCCGGTGTCAAATTTGAACATATATCTGCTCCTCAGCCTCATGATATTGCTAAAGCTATAGGTAGGGAAGCTGCTGAGATGATCAATCAAGTGTCTGATAGTGTGATTCCGGCGTTCAAGTCTACTGCTGAGGAGCTTTTGAAAAACTCCGGTTTGTCAGTTGTTGACTTACTTGCAAAGGCTCTTGCCAAGGCTGTTGGTTATACTGAGATGAAGAAAAGATCGCTTCTCACTTCCATGGAGAACCATGTTACATTACTTCTTGAGATTGGGAAACCTATCTTCACTGCAACTTTTGCATATGGAGTGTTGAGGAGATTCTTGGCCGAAGAGAAGGTTGAGGCAGTGAAGGGTCTCACTCTCACCGCCGAAGGAAGTGGCGTTGTCTTTGATGTACCAGCTGAAGATTTAGATACATATCTTGCAGGTAAGGACAAGGCCTCAAGTGTGAGGTTAGAGGTGTTGACAGCGTTGCCACGTTTGCAAGAAAAAGACCAATCAAGGGGTGGAAGATTTGGTAGTGGTGGCCCTCGTCGTGGTGGTTTCGGAGATAGAAGTGTGGGGAGCAGGTTTTTGGGTGGAAGAGGTGGCAGCGGCAGGAATGTTAGATTTTCCAGTGACAGATTCTCTAATAATGGTGGCATTGGGAGAGGTCGTGGCATCAGGAGTGGAAAGAGATGGTGA 1902 0.46 MGTPNGDVRKKEEEEEAKLMEQEYQDKKEEEEEEEEDPNAVWRFRISEPLKETLKGKGIESLFPIQAITFDTILDGSDLVGRARTGQGKTLAFVLPILESLINGIAKASRKTGYRRPPSVLVLLPTRELASQVHSDFELYGGAVGLTSCCLYGGAPYQSQEIKLKRGVDIVVGTPGRIKDHIERENIDLSQLRFRVLDEADEMLRMGFVEDVELILGKVENISKVQTLLFSATLPDWVKHIAAKFLKPDKKTADLVGNTKMKASTNVRHIVLPCTTSARSRLIPDIIRCYSSGGRTIIFTETKESASQLAGFLPGARALHGDIQQAQREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNSGVAVMLYDPRRSSISKIERESGVKFEHISAPQPHDIAKAIGREAAEMINQVSDSVIPAFKSTAEELLKNSGLSVVDLLAKALAKAVGYTEMKKRSLLTSMENHVTLLLEIGKPIFTATFAYGVLRRFLAEEKVEAVKGLTLTAEGSGVVFDVPAEDLDTYLAGKDKASSVRLEVLTALPRLQEKDQSRGGRFGSGGPRRGGFGDRSVGSRFLGGRGGSGRNVRFSSDRFSNNGGIGRGRGIRSGKRW* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy9g2133 633 Pfam Helicase conserved C-terminal domain 287 384 IPR001650 -
Ahy9g2133 633 MobiDBLite consensus disorder prediction 1 25 - -
Ahy9g2133 633 SMART ultradead3 58 270 IPR014001 -
Ahy9g2133 633 Gene3D - 5 253 IPR027417 -
Ahy9g2133 633 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 70 252 IPR014001 -
Ahy9g2133 633 Pfam GUCT (NUC152) domain 473 568 IPR012562 GO:0003723|GO:0004386|GO:0005524
Ahy9g2133 633 MobiDBLite consensus disorder prediction 571 633 - -
Ahy9g2133 633 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 5 605 - -
Ahy9g2133 633 Gene3D - 266 491 IPR027417 -
Ahy9g2133 633 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 117 396 IPR027417 -
Ahy9g2133 633 CDD GUCT_RH7_like 480 565 - -
Ahy9g2133 633 Pfam DEAD/DEAH box helicase 63 240 IPR011545 GO:0003676|GO:0005524
Ahy9g2133 633 SUPERFAMILY RNA-binding domain, RBD 477 560 IPR035979 GO:0003676
Ahy9g2133 633 SMART helicmild6 307 384 IPR001650 -
Ahy9g2133 633 Gene3D - 492 563 - -
Ahy9g2133 633 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 196 204 IPR000629 -
Ahy9g2133 633 CDD SF2_C_DEAD 267 393 - -
Ahy9g2133 633 Coils Coil 10 37 - -
Ahy9g2133 633 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 7 5 605 - -
Ahy9g2133 633 MobiDBLite consensus disorder prediction 1 39 - -
Ahy9g2133 633 CDD DEADc 50 247 - -
Ahy9g2133 633 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 282 423 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy9g2133 Ahy-Chr9 110230574 110233909 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy9g2133 76 426 Eukaryotic Initiation Factors Gene Family AT1G72730 30.056 1.06e-39 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy9g2133 K16911 - gmx:100820207 904.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g3502 19 157710152 157713449 Ahy9g2133 9 110230574 110233909 hybridization