Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy9g2111 ATGGTGAGGGGAAAGACTGAGATGAAGAGAATAGAGAATGAATGTAACCGAAAAGTGACGTTTTCAAAGCGCAGAAATGGTCTTTTAAAGAAAGCTCATGAGTTATCTGTTCTCTGTGATGCTCAAGTTGGAGTCATAATATTCTCCCAAAAGGGAACCTTATTTGAGTTCTCATCAACTTCTTCTCACATTTCAAAGATATTGGAACGCTACCAGGAATATACCGGAGTGTTTCCACCCAACAAGTTAAGAGAGGATTATATCCAGAAACTCAAGTTTGACTCCGCAAGCATGGAAGAAAAAATTGAGATCCTTGAACTGTCTAGAAGGTCACTTCTACTATTTTGTCCTATTATAATTAGCTTTTCAAAATGTAATTTAATCTTAACATTATATTTTTTTTGCATGGAAAAACCATTGAAGCACATAGAAGAGGAAGCAACAGAAACAACTCATCACACTTTGGATGTGGAGACTGATCTATTTATTGGGCTTCCAAAGCAGTATGCTGATCATAATCAAATATATACATAG 534 0.3577 MVRGKTEMKRIENECNRKVTFSKRRNGLLKKAHELSVLCDAQVGVIIFSQKGTLFEFSSTSSHISKILERYQEYTGVFPPNKLREDYIQKLKFDSASMEEKIEILELSRRSLLLFCPIIISFSKCNLILTLYFFCMEKPLKHIEEEATETTHHTLDVETDLFIGLPKQYADHNQIYT* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy9g2111 177 PANTHER MADS BOX PROTEIN 1 113 - -
Ahy9g2111 177 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ahy9g2111 177 PANTHER MADS-BOX PROTEIN SOC1 1 113 - -
Ahy9g2111 177 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ahy9g2111 177 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ahy9g2111 177 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ahy9g2111 177 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Ahy9g2111 177 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ahy9g2111 177 SUPERFAMILY SRF-like 3 78 IPR036879 GO:0003677|GO:0046983
Ahy9g2111 177 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Ahy9g2111 177 CDD MADS_MEF2_like 3 76 IPR033896 GO:0000977|GO:0045944
Ahy9g2111 177 Gene3D - 13 77 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy9g2111 Ahy-Chr9 109858245 109864054 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy9g2111 1 113 MADS-box Gene Family AT5G62165 57.895 1.19e-36 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Ahy9g2111 SRF-TF 3.40E-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy9g2111 - - ahf:112711696 345.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g3517 19 157884272 157888946 Ahy9g2111 9 109858245 109864054 hybridization