Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy9g2080 ATGCCAAATAAGTTAAGCAACAGCTTGAATGACATTAATAAAAGAACAAAGAAGGAATCATGCATTGAGAAATTGGAGAAACACATTGTTCAGAATCCTTCGGACAGGGTTGGCAACTCAATGGCTCAATTTGAAGACCTCCCAGACGAAGATCCGGAAGAGGAGGAATTGTGTGAGGAGCTAGAGGAAGATCCAGAGGAGGAATCGGCTGAGGAAGTAGAGGATGATCCACACAAGGAATCAGCTGAGGAACTGGAGGAAGATCCAGAGGAGGAATTAGTTGAGGAAGATCCAGAAGAGGAATCAACTGAGGAAGTAGAGGAAGATCCAAACGAGGAATCAGCCAAGGAACTGGAGCAAGATCCCCAGCAGGAATCAGTTGAGGAACTTGAGGAAGATCCAGAGGAGGAATCAGCTGAGGAACTGGAGGAAGATCAAGAGGAAGAATCAGCTGAGGAACTGGAGGAAGATGTACAGGAGGAATCAGCCAAGGAACTGGAGGAAGATCCAGAGGAGGAATCAGTTGAAGAAGTAGAGGAAGATGTACAGGAGGAATCAGCCAAGGAACTGGAGGAAGATCCTGAGGAGGAATCAGTTGAAGAAGTAGAGGAAGATGTACAGGAGGAATCAGCCGAGGAACTGGAGGAAGATCCCGAGGAGGAATCAGCTGAGGAACTGGAAAAAGATCCAGAGGAGGAATCAACTGAGGAACTAGAGGAAGATCCTGAAGAGGATCTAGTAGTAAACATCAAGTGGGAGGGTGCATCATGTAATGAAGTTCCATTATTATCCCAGGCATCGTATCAATCACCGAAGAAATGCAAGCAGGAGGGAATGCAAAGCCAAAATTTAGAACCAGAAGCTTCTCGACTGGAACTCAGTAGTGACAAGTCAATTTCTGTGGCAACTACCGATAAAGTTGGTTCCAAAGAAGAAGTTTCAGGAAGGTCGGCAAAACAAAGGCGTAGTAGATGGGAACCACAACCTCGTGGAAATGGAACGAATGATGATCTGACTTGCAAAAGGAGGAAAACCAGGTGGTCTAGTGAAGAAACTCAAATGAAAATGCTGGGTCCACTTCAGCTTCCTAACTTAAATATCATATCTAAGTTGATGACATTAAACCCAGATTTTAACCCTCCTCCTGAATACAAGCCCCCAAAGCTCTTCAAAAAGCTTTACATACCAGTGAAAGAATATCCAGAGTACAATTTCATTGGACTTATTATTGGTCCTCGTGGAAACACACAGAAGAAGATGGAAAAAGAATCTGGGGCTACAATTCTTCTAAGAGGTAAAGGCTCCTCAAAAGCAACTAGCAAATGTGACTCTGAGGAAGAAGATTTACATGTTTTAATAGAAGCTGACAACCAAAAATCACTGGATGCAGCAGTTGGCATGGTTGAAAAACTGCTAATTCCAGTTGAAGAAGGACAAAATGAGCACAAGCGAGAACAGTTAAAGGAGCTGGCTCAACTGAAAGCAACACGGAGAGATGAAAATGTGTGCAGTGTGTGTGGTGATAAGGGACACAGACATTATGCATGCCCTAACCTTAGTTCAACTTTTAATTTCGATTTATTTGACACTGGTTGTAGCAGCAGCATTTCAATCCCAACTTATCCTGCTACTGCATTGTTTCCACCAAACAGTAACTTTCCATGCGGATCTGGAACTAGTCTTAATTCAGTGCAGAATAGACAAATAAGGCCTGGAAAGGAAATAAACGACAAAAACCTTTATGTTGGTTATTTGCCGCCATCAATTGACAATAATAGATTGACTGAGCTGTTCTCCCCATTTGGTAAGATCACTGAAGCTGATGTTATTAAGGATCGAACCACTGGCATCAGTAAAGGTTATGGCTTTGTCAAATTTGAAGATTCCCAGGATGCAGCTTTAGCTATAACGCATCTAAATGGTTTCAGAATTGATGGAAAGTTTTTGAAAGTGAGGATAGCCGGACTGCAGGCAAATAATGAAACCCCAAGTCTAAACCCTATTCCTCAGATACCATTGCCTGCAACTGTCTCCACAAATGTCATTCACCAAACGAATCTTTCTGATCCATTACATTTCATGCTGCCAGAATACCAATCTTCATTTCATGACAGCAGTAGCACAAATATGTTTTCATGTAATATCAACTCAGAGGATGGTGATCCTCTGAAGGTAAATGCTTTGCCCTTTACTCCTCCAAGAAACACTTTGATCACTCCCCATCCAGGTTATTCTGGCAACTTTTCAGATCAAAGTTTGTTCTCATCAAAAGATTCAACCGAACATTTTCCTGGTGATCCAGGCAATCTTGGTAATTTCAGTCCTTTCTTATGA 2334 0.4233 MPNKLSNSLNDINKRTKKESCIEKLEKHIVQNPSDRVGNSMAQFEDLPDEDPEEEELCEELEEDPEEESAEEVEDDPHKESAEELEEDPEEELVEEDPEEESTEEVEEDPNEESAKELEQDPQQESVEELEEDPEEESAEELEEDQEEESAEELEEDVQEESAKELEEDPEEESVEEVEEDVQEESAKELEEDPEEESVEEVEEDVQEESAEELEEDPEEESAEELEKDPEEESTEELEEDPEEDLVVNIKWEGASCNEVPLLSQASYQSPKKCKQEGMQSQNLEPEASRLELSSDKSISVATTDKVGSKEEVSGRSAKQRRSRWEPQPRGNGTNDDLTCKRRKTRWSSEETQMKMLGPLQLPNLNIISKLMTLNPDFNPPPEYKPPKLFKKLYIPVKEYPEYNFIGLIIGPRGNTQKKMEKESGATILLRGKGSSKATSKCDSEEEDLHVLIEADNQKSLDAAVGMVEKLLIPVEEGQNEHKREQLKELAQLKATRRDENVCSVCGDKGHRHYACPNLSSTFNFDLFDTGCSSSISIPTYPATALFPPNSNFPCGSGTSLNSVQNRQIRPGKEINDKNLYVGYLPPSIDNNRLTELFSPFGKITEADVIKDRTTGISKGYGFVKFEDSQDAALAITHLNGFRIDGKFLKVRIAGLQANNETPSLNPIPQIPLPATVSTNVIHQTNLSDPLHFMLPEYQSSFHDSSSTNMFSCNINSEDGDPLKVNALPFTPPRNTLITPHPGYSGNFSDQSLFSSKDSTEHFPGDPGNLGNFSPFL* 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy9g2080 777 MobiDBLite consensus disorder prediction 46 115 - -
Ahy9g2080 777 MobiDBLite consensus disorder prediction 124 246 - -
Ahy9g2080 777 PANTHER SPLICING FACTOR-LIKE PROTEIN 1 239 364 - -
Ahy9g2080 777 PANTHER SPLICING FACTOR-LIKE PROTEIN 1 366 707 - -
Ahy9g2080 777 MobiDBLite consensus disorder prediction 11 31 - -
Ahy9g2080 777 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 578 656 IPR000504 GO:0003723
Ahy9g2080 777 Gene3D K Homology domain, type 1 309 506 IPR036612 GO:0003723
Ahy9g2080 777 MobiDBLite consensus disorder prediction 268 349 - -
Ahy9g2080 777 Pfam KH domain 404 469 IPR004088 GO:0003723
Ahy9g2080 777 SUPERFAMILY RNA-binding domain, RBD 568 654 IPR035979 GO:0003676
Ahy9g2080 777 Coils Coil 136 164 - -
Ahy9g2080 777 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 580 650 IPR000504 GO:0003723
Ahy9g2080 777 PANTHER RNA-BINDING PROTEIN RELATED 239 364 IPR045071 -
Ahy9g2080 777 PANTHER RNA-BINDING PROTEIN RELATED 366 707 IPR045071 -
Ahy9g2080 777 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 389 506 IPR036612 GO:0003723
Ahy9g2080 777 SMART rrm1_1 579 652 IPR000504 GO:0003723
Ahy9g2080 777 MobiDBLite consensus disorder prediction 309 326 - -
Ahy9g2080 777 MobiDBLite consensus disorder prediction 268 307 - -
Ahy9g2080 777 MobiDBLite consensus disorder prediction 1 250 - -
Ahy9g2080 777 CDD SF1_like-KH 391 498 - -
Ahy9g2080 777 SMART kh_6 389 473 IPR004087 GO:0003676
Ahy9g2080 777 MobiDBLite consensus disorder prediction 755 777 - -
Ahy9g2080 777 Gene3D - 557 662 IPR012677 -
Ahy9g2080 777 ProSiteProfiles Type-1 KH domain profile. 404 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy9g2080 Ahy-Chr9 109486853 109490037 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy9g2080 490 654 Eukaryotic Initiation Factors Gene Family AT3G11400 33.333 2.31e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy9g2080 K13095 - csin:114293476 392.504