Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy9g2060 ATGTCAGAATCTGAAGAAGATAAAACAGACTTTGCTTCTCTAAAGTCAAAGGAGGACCAACAACAATCACCACCTCAACTTCCTCCTCCTTCCGCCATGGATTTCGATCTGGACTTGGAAACTTCGTGGCCTTTGGATCACTTGTCCTTCGTCTCCAATAACCCCATGTCACCTTTTCTGTTCCCAATCTCATCTGAACAACCTTCTTCTCCTCTTTGGCTCTTCTCTGATGCAGAAGATGAAAGGCACAACAACACTCTTGCTTCAGCTCCAGCTTTCTCTGATTTCCACAAGATATTCTCTTGTGATTCAAACTCAGTAACTGAAAAACCAGTGGAGAATGCTAATGATGAAGACAAGAAACTGTTGCCACCCATAGTGGCTATGCCACCATTGGAAATTTTGGATAGATATTGTGTAATAAAGGAAAGGATGACACAAGCGCTTCGATACTACAAAGAGTTGACAGAACAGAATGTTCTGGCGCAGGTTTGGGCACCTGTTAGAAATGGTAATAGGTTTGTGCTTACAACTTCAGGTCAACCATTTGTTCTTGATCCACATAGTAATGGACTCCACCAGTATCGAACGGTGTCCCTGATGTATGTGTTTTCGGCGGATGGAGAGAAAGAAGAAAGTCTTGGACTTCCTGGTCGAGTTTATCAGCAAAAAGTACCAGAATGGACACCTGATGTTCAGTATTATTCTACTAAGGAGTATCCTCGCAGAGATCATGCACAACATTACAATGTCCGCGGTACCTTGGCTTTGCCTGTCTTTGAACCTTCAATGCAGTCTTGTGTAGGTGTGTTGGAGTTGATCATGACTTCACAGAAGATTAACTATGCTCCTGAAGTTGACAAAATTTGCAGAGCCCTTGAGGCAGTGAATTTGAAGAGTTCAGAAATTTTAGGCCACCAATACGCTCAGATTTGTAATGAAGGCCGCCAGAATGCGCTAGCAGAGATCTTGGAGATATTGACAGTGGTTTGCGAAACTCACAATTTACCTTTGGCGCAAACATGGGTTCCATGTAGGCATCGGAGTGTTCTGGCCCATGGAGGTGGCCTAAAGAAAAGTTGTTCAAGTTTTGATGGTAGTTGCATGGGGAAAGTTTGCATGTCTACAACTGATATAGCATTCTATATCATAGATGCTCATTTATGGGGTTTCCGAGAGGCCTGTGTCGAACATCACTTACAGCAAGGTCAAGGGGTTGCTGGCAGGGCTTTTTCTTCACATAGCATGAGCTTCTGTAGGAACATTACCCGATTCTGCAAAATTGATTACCCTTTAGTTCATTACGCTCTCATGTTTGGGTTAACTAGCTCCTTTTCAATCTGTTTGCGAAGCTCGCACACCGGAGATGATGACTATGTATTAGAGTTTTTTCTGCCACCTAGGATCACAGACTTTAACGAACAGAAGGCTTTGTTGGGATCCATATTGACAATAATGAAACAACATTTCCAGAGCCTTAAGATTGCTTCTGGTGTTGAACTTGAACAGAATGCTTTGGTTGAAACTATTGAAGCAACAATTGAAGGAGTTCATCTGAGGTTTGAATCTATTCCAGTTAGACAGGATGCTTCACCAAACGTGAGGGAGGAATTGGCACAAGATCCGTCGTTGCAGAAAATAATGATGGGCTGCAATGATGGAGGGAGTATTGGTGATCAGATACCCTCCTTAGAAACCAAAAACACAAATAAGCCATCAGAGAGGAAACGTGGGAAAACTGAGAAATCAATAAGTCTTGAAGTTCTGCAACGTTATTTTGCTGGGAGTCTTAAGGATGCTGCAAAGAGCCTTGGTGTTTGCCCCACTACAATGAAGCGCATCTGCAGGCAGCATGGGATATCCCGTTGGCCATCTCGAAAGATCAACAAAGTTAACCGTTCCCTGTCCAAGCTCAAGCGTGTTATTGAATCAGTCCAAGGTGCCGAAGGAGCATTCGCTTTGAATCCTCTGAGCACAAGTCCTCTTCCCTTTCCTGAGCATTCTACTCCAAACAAGTTCAGCCAGCAAGCCTCTCCAACTGAACCTCAGATAAGAGAAAATGAATTAGATGCCTCTAAAGTTTTAGAAACAACCAGAATTGCCAGAGCACAGTGTCTCGAGAAAATGGTTAATGATAAAAGCGGTTCTATTCGGGAGGTAGGGAAGGAAACAAAGGGGCCTAGAGCAAAGAGTTGCTCTAGTGCAGATAGCACAAATCCTACTTCTCATGGTTCATGCCATGGTAGCCCTCCTATCGAAAGCTCGCCCGTAAAAGATATATTCATTACATCAAACAATGATCAATGTGTTGGTCTAAGGTCACCAGAGGCAACAATGCAGCCGCCGAATAATACACTGAGCTACCCAACGACTTGCACTATGCCTGATATGGTGGCAACAGAACTTCAAGAGCCATTCGGAGGAATGCTGGTAGAAGATGCCGGAAGTTCCAAAGACTTGAGAAACCTATGTCCTTCTGTAGCTGAGGCAATTGTGGAGGACATGGCCCCGGAACCTTGCCGGACTAATCCTCCATTTTCTGGGTTGGCTCCCAAGCAATGCATGGATCCCCTTAAGGAGACAGTGACACCTTTTGCAGCTAGAATAGAAATGAAGACTGTCACTATTAAGGCAACATATAGAGAAGATATCATAAGGTTTAGGGTTTCTTTGAATTGTGGAATTGTGGAACTGAAAGAAGAAGTTGCCAAAAGGTTGAAACTAGAAGTAGGTACTTTTGATATCAAGTACCTTGATGATGATCATGAATGGGTTTTGATAGCATGTGATGCAGATCTACAAGAGTGCATAGATGTTTCAAGATCATCAGCAAGTAACATAATAAGAGTTTTGGTGCATGAAATAACTTCCAATCTTGGAAGCTCATGCGAGAGCTCAGGGTAG 2904 0.4329 MSESEEDKTDFASLKSKEDQQQSPPQLPPPSAMDFDLDLETSWPLDHLSFVSNNPMSPFLFPISSEQPSSPLWLFSDAEDERHNNTLASAPAFSDFHKIFSCDSNSVTEKPVENANDEDKKLLPPIVAMPPLEILDRYCVIKERMTQALRYYKELTEQNVLAQVWAPVRNGNRFVLTTSGQPFVLDPHSNGLHQYRTVSLMYVFSADGEKEESLGLPGRVYQQKVPEWTPDVQYYSTKEYPRRDHAQHYNVRGTLALPVFEPSMQSCVGVLELIMTSQKINYAPEVDKICRALEAVNLKSSEILGHQYAQICNEGRQNALAEILEILTVVCETHNLPLAQTWVPCRHRSVLAHGGGLKKSCSSFDGSCMGKVCMSTTDIAFYIIDAHLWGFREACVEHHLQQGQGVAGRAFSSHSMSFCRNITRFCKIDYPLVHYALMFGLTSSFSICLRSSHTGDDDYVLEFFLPPRITDFNEQKALLGSILTIMKQHFQSLKIASGVELEQNALVETIEATIEGVHLRFESIPVRQDASPNVREELAQDPSLQKIMMGCNDGGSIGDQIPSLETKNTNKPSERKRGKTEKSISLEVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFALNPLSTSPLPFPEHSTPNKFSQQASPTEPQIRENELDASKVLETTRIARAQCLEKMVNDKSGSIREVGKETKGPRAKSCSSADSTNPTSHGSCHGSPPIESSPVKDIFITSNNDQCVGLRSPEATMQPPNNTLSYPTTCTMPDMVATELQEPFGGMLVEDAGSSKDLRNLCPSVAEAIVEDMAPEPCRTNPPFSGLAPKQCMDPLKETVTPFAARIEMKTVTIKATYREDIIRFRVSLNCGIVELKEEVAKRLKLEVGTFDIKYLDDDHEWVLIACDADLQECIDVSRSSASNIIRVLVHEITSNLGSSCESSG* 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy9g2060 967 MobiDBLite consensus disorder prediction 1 35 - -
Ahy9g2060 967 ProSiteProfiles PB1 domain profile. 873 955 IPR000270 GO:0005515
Ahy9g2060 967 PANTHER PROTEIN NLP8 21 966 IPR045012 GO:0003700
Ahy9g2060 967 MobiDBLite consensus disorder prediction 1 15 - -
Ahy9g2060 967 CDD PB1_NLP 874 954 IPR034891 -
Ahy9g2060 967 SMART PB1_new 873 955 IPR000270 GO:0005515
Ahy9g2060 967 MobiDBLite consensus disorder prediction 714 758 - -
Ahy9g2060 967 SUPERFAMILY CAD & PB1 domains 870 958 - -
Ahy9g2060 967 MobiDBLite consensus disorder prediction 557 581 - -
Ahy9g2060 967 ProSiteProfiles RWP-RK domain profile. 570 651 IPR003035 -
Ahy9g2060 967 MobiDBLite consensus disorder prediction 661 685 - -
Ahy9g2060 967 MobiDBLite consensus disorder prediction 659 686 - -
Ahy9g2060 967 Pfam RWP-RK domain 583 631 IPR003035 -
Ahy9g2060 967 MobiDBLite consensus disorder prediction 730 749 - -
Ahy9g2060 967 Pfam PB1 domain 873 954 IPR000270 GO:0005515
Ahy9g2060 967 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 21 966 - -
Ahy9g2060 967 Gene3D - 870 954 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy9g2060 Ahy-Chr9 109144432 109148504 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy9g2060 275 967 NLP Transcription Factor Family AT4G24020 52.933 0.0 680
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Ahy9g2060 PB1 9.50E-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy9g2060 - - aip:107618129 1927.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g3567 19 158336472 158340544 Ahy9g2060 9 109144432 109148504 hybridization
Ahy15g3547 15 158289205 158293653 Ahy9g2060 9 109144432 109148504 PCT
Ahy5g3138 5 113225907 113230420 Ahy9g2060 9 109144432 109148504 PCT
Ahy9g2060 9 109144432 109148504 Ahy15g3547 15 158289205 158293653 PCT
Ahy9g2060 9 109144432 109148504 Ahy5g3138 5 113225907 113230420 PCT