Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy9g2055 ATGCCAGTTGCTAAACTCACGGCCTCTGGCTCTCCTGATGTCATGAAAACAGAAGACAGAAATGATTCTATAGATACCATCATCAGACAAGCAATTGGAAAGGAACCTTTCCTTTCTTTTCCTAGGGCTGGTGACAGCCCTGTACAATGGATTCAATTACTCCATGCTTTAGACCAGCAAGAACTTCCAGGGTGGCCTTTGCTTTCTCCTGTGAAGGTTCAGTTGCAGAAGTGTGACAAGTGTTCTCGAGAGTTTTGCTCTCCCATTAACCATAGAAGACATATGCGTGTACACCATCGATTGAAGAAGCTTGATAAGGATTCTAAGAAAAACCGAGATCTTCTAGGAGCTTATTGGGATAAGCTCTCTATAGAAGAGGCAAAAGAAGTTGTGTCATTCAAGAATGTAATGTTGGAGGAAGTTCCAGGGTCTTCAATTTTAAATGCTTTGGCAAGTCTGACTCAAAAACAAGGATTTTCTTCTCTTCCACAGTATTATCTTAAAGCTGGTTCTGCCCTTCTGGATATTGTCGAATCGAGGCCTTCAAGCTTTCCTATATCTTCCCAAGAGTTGTTCAGTATACTTGATGATTCCAGTGAAAAAACATTTTTGTGTGGGACAGCAGTGTCAATGCAAAGATATGTTTTTGATGGAGAGGCTGGAAAGATTGGTCTTGAACCAAAAAACATAGTTGCTTGCACTAGTTTCTTGGTAGAGCAGAAATTGGTGAAGGCATGGCTTGCAGACAAAGAAGCTGAAGCATTGAAGTGTCAGAAGCAGCTAGTTGAGGAGGAAGAAGCTGCTCAGAAAAGACAAGCTGAGATTTTGGAGAGGAAACGCCAGAAAAAGCTTAGACAAAAAGAACAGAAGGGGAGGGAACTGCTCGAAGATGACATTGAAATTAAACGGAACATCAATAGCACAGGAGAGGCTGTACTATCTGCAGAAACATCTTTGGATACGTGTGTCTTTGAAGCACATAATTCTGATACATTTGCAGATCATGCTTCTTCACCACATGCATCCGCCTGTCACTTTCCTGACATTTATGAAGGTGCTGAAAGGGAGACACACTCAGGGTATGAATGTGACACTGATCAAAATATTGAGCGACAAACATCCCACAGACATAGTCGTCGACGCATGATGGTTGCGAGACAGCAAGGACTGCCAAAATCACAGTGGGCTGTATCCAACTGTTTACATGCGAGCCCATATTCTCAATTATCAAAGCATGGAGTCATTCAGAGATATGGGACAAACCGGGATCAAAGAGTGACTTCTATTACTAATGGGATGAAAGTTTGGAGTCGAAAGCCTAAACCAGATATTGATGGGATGGTTTCAAAAGCCAGACTGCAAAAAGAACCAGACAAGGTTAAGAATCATGAAGTATTAATAGGATCTATATCTGTAACTCTAAGCAATTGCAGCCAATCAGTGGGTAGCCTTGTGGCATCTCATGGTGATGATATTGTGGAGAATCCGACAAAGCAGTGTACTGTACAGGAGAAGCCAGTGAAACCTGATTCTTCCCAGAGTAGCAACAACCCATTAACAGTGAAGTTTTGGCGGCCAATTGGCAAACATGGAACCAAAGACCCATTTCCACTTCAAAATGGTAGGGCTGGAGCTGAAGCTGATACTTATGAAAAAGAGGATCAAACTTTGTCAGGTCAAAGTAGTTTAAGGGTGTATAGTATAGATCATAGTGATATTGGTTTCGGGAACAAGTTTCCCGATTTTGGTGCTAAAGCATATCCAAGAAGCCTTTTCTCCAGACATGCTGCCAAAGCCTTTCTTGCACAAAGATGGAAAGAAGCTATTTCATCAAACCATGTGAAATTGGTTGTTTCGCCTGATTCTGAACCGCTTGAATGCCAAGAGGTACAAGATCGTGAACTGACAGCATCTCAATTTTCTAATGCCGATAGATATGGCACTGTTGCAAATGCAGAGAATCAATTGCATGCAACCTCCGAAGTTACTAAATCCAAAACCAAAATGAAGCCTAAAAAGGGAATCAAGATAAAGTATATTCCCAAACAAAAAGCAGCTACCTAG 2064 0.4167 MPVAKLTASGSPDVMKTEDRNDSIDTIIRQAIGKEPFLSFPRAGDSPVQWIQLLHALDQQELPGWPLLSPVKVQLQKCDKCSREFCSPINHRRHMRVHHRLKKLDKDSKKNRDLLGAYWDKLSIEEAKEVVSFKNVMLEEVPGSSILNALASLTQKQGFSSLPQYYLKAGSALLDIVESRPSSFPISSQELFSILDDSSEKTFLCGTAVSMQRYVFDGEAGKIGLEPKNIVACTSFLVEQKLVKAWLADKEAEALKCQKQLVEEEEAAQKRQAEILERKRQKKLRQKEQKGRELLEDDIEIKRNINSTGEAVLSAETSLDTCVFEAHNSDTFADHASSPHASACHFPDIYEGAERETHSGYECDTDQNIERQTSHRHSRRRMMVARQQGLPKSQWAVSNCLHASPYSQLSKHGVIQRYGTNRDQRVTSITNGMKVWSRKPKPDIDGMVSKARLQKEPDKVKNHEVLIGSISVTLSNCSQSVGSLVASHGDDIVENPTKQCTVQEKPVKPDSSQSSNNPLTVKFWRPIGKHGTKDPFPLQNGRAGAEADTYEKEDQTLSGQSSLRVYSIDHSDIGFGNKFPDFGAKAYPRSLFSRHAAKAFLAQRWKEAISSNHVKLVVSPDSEPLECQEVQDRELTASQFSNADRYGTVANAENQLHATSEVTKSKTKMKPKKGIKIKYIPKQKAAT* 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy9g2055 687 ProSitePatterns Zinc finger C2H2 type domain signature. 78 99 IPR013087 -
Ahy9g2055 687 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 103 IPR013087 -
Ahy9g2055 687 MobiDBLite consensus disorder prediction 531 556 - -
Ahy9g2055 687 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 685 - -
Ahy9g2055 687 Coils Coil 247 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy9g2055 Ahy-Chr9 109100709 109106324 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy9g2055 18 684 C2H2 Transcription Factor Family AT4G25610 43.704 3.52e-151 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy9g2055 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy9g2055 - - gmx:100799153 907.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g3571 19 158376254 158381857 Ahy9g2055 9 109100709 109106324 hybridization
Ahy15g3554 15 158325092 158330577 Ahy9g2055 9 109100709 109106324 PCT
Ahy5g3145 5 113275772 113281369 Ahy9g2055 9 109100709 109106324 PCT
Ahy9g2055 9 109100709 109106324 Ahy15g3554 15 158325092 158330577 PCT
Ahy9g2055 9 109100709 109106324 Ahy5g3145 5 113275772 113281369 PCT