Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy9g1937 ATGGCGAATGGTATCACGCACCAGCCTTCTCCTTCCATGCTCGTGGACCAGTTTAACGCCTTACTTCCACGGCGCCAAAGCTACCTCAAGGCTTTCTCTACCGAAGAAATTGTTCGGACGTATGGGCTATTGTTGTCAGAACTCACCTCCAATGTGAATCCCATCATTACCGATCTCACTATCATTGCTGGCCAGCAGCGGAAACACGCCAAGGGCATCGCCGATGCCATTTGCAACCGGATTCTTGAGGTTGGTGGTGATCGGTTGGACTCAACGGGAACTGTAGGTAATACAAGAGAAGGAGGGTTGAATGAATGGCAGCAAAAGAGATTTTCTAGTGATGGTTGGAACATATTCCAAACTTCCAAGACTTATAATCTCAATGATGAACAACGACGTCAAAGTCCAAGAGCTCTTATTGAGGCATATGGTTGTGACAAAGGCCGTGAAATTCCTAGTACTAAGCTTTTGTTTGTGGAGCAGCAGCCTGGCAGAAATGGTTTAGGGAGCAAGTTTCCATTGGCATCATGGCAGCACACTGAAGAAGAGGAGTTTGATTGGAAAGATATGAATCCAGGATTAGTAGACTGTAGTAGAAACAGCAGTTCTATGCAATCAAGTGTTAGATTCTCCAGGAAAAGGAAGTTATCTAATGATCTATCTAATTCTTCACATTACCCGTTCAATATGGGGGCTGCTTCCCCTGCTTTCAATGCTCATGCTACTCGTCCTTCCGGCTTGAATCCAGCATTTCCATTGCAAAAACGTCCTAGGAGTCTGCTTGAACCAATAAACATTAATAATAACACCAATGTGGGTCATGGTCCAAATAGAACTCTGTTTATACATGACCAGTTGCCTAATCAACCTGGACCAATTTCCTCTAACCTGCAAAATCATGGACAAGCACCTCAACTACAGTTTCTTCCACCTCAAGTTCCATCTTCAACACAAATTAGTCATGGGAGCTCTTTGCATTTACATGGGGGAACCTTGCCACCTTTACGTCCAAGCCTCCCAACTGCTCCATCACAAATGATGTCTCATCCCCATGCCCATGATTCGATGACAAGTCAACCACCACCTACATATCTTGATTTGATTAGTTCACTAGTGAATCATGGTGTGATCTCGGTAACCAATCCACCTACCGGACTGGATTCCATTGGGGCGGAGTTCGATCCAGATATCTTGAAGGTTCGTCATGAAGGTGTAATCAGTGCCTTATACAGTGATCTTCCTAGACAATGCACGAGCTGCGGTCTCCGATTCAAAAGGCAAGATGAGCACAGTAGACATATGGATTGGCACGTGACTAGGAACCGAATGTCAAAAAGCCGGAAGCAAAAGGGGTCTCAAAAGTGGTTTGCAAGTGGGAGCCTGTGGCTAAGTGGTGCAGAGGCTTCGGGAAAGGAATCGATTCCAGGGTCGCTGGCTCCCGAAGAGACAGAGGAAATGAAAGACGAGGAAGAGTTAGGCGTTCCTGCTGAAGAGGATCAGAGTAGATGTGCACTGTGTGGAGAGGGATTTGATGAGTTTTACAGCCACGAAATGGATGAGTGGATGTATAGAGGAGCCACATACCTTAAGGCACCCACGGGAACAACATTGGCCACCATGGACAGACATCAACTAGGGCCCATTGTTCATTCCAAATGCAGATCTGACTCTGACTCTACTATGCCCTCAACCAACAGGAAACCTACCAAGAGAGTAGTAAGAGAAAAAGAATGCGGGTCAACCAAACATCAGTTTTGTGCACCCATAATTAGGACTTGCTAA 1782 0.4585 MANGITHQPSPSMLVDQFNALLPRRQSYLKAFSTEEIVRTYGLLLSELTSNVNPIITDLTIIAGQQRKHAKGIADAICNRILEVGGDRLDSTGTVGNTREGGLNEWQQKRFSSDGWNIFQTSKTYNLNDEQRRQSPRALIEAYGCDKGREIPSTKLLFVEQQPGRNGLGSKFPLASWQHTEEEEFDWKDMNPGLVDCSRNSSSMQSSVRFSRKRKLSNDLSNSSHYPFNMGAASPAFNAHATRPSGLNPAFPLQKRPRSLLEPININNNTNVGHGPNRTLFIHDQLPNQPGPISSNLQNHGQAPQLQFLPPQVPSSTQISHGSSLHLHGGTLPPLRPSLPTAPSQMMSHPHAHDSMTSQPPPTYLDLISSLVNHGVISVTNPPTGLDSIGAEFDPDILKVRHEGVISALYSDLPRQCTSCGLRFKRQDEHSRHMDWHVTRNRMSKSRKQKGSQKWFASGSLWLSGAEASGKESIPGSLAPEETEEMKDEEELGVPAEEDQSRCALCGEGFDEFYSHEMDEWMYRGATYLKAPTGTTLATMDRHQLGPIVHSKCRSDSDSTMPSTNRKPTKRVVREKECGSTKHQFCAPIIRTC* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy9g1937 593 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 11 83 - -
Ahy9g1937 593 MobiDBLite consensus disorder prediction 199 220 - -
Ahy9g1937 593 SUPERFAMILY ENTH/VHS domain 34 84 IPR008942 -
Ahy9g1937 593 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 128 558 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Ahy9g1937 593 Gene3D - 29 88 IPR008942 -
Ahy9g1937 593 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 128 558 - -
Ahy9g1937 593 MobiDBLite consensus disorder prediction 467 498 - -
Ahy9g1937 593 ProSitePatterns Zinc finger C2H2 type domain signature. 417 437 IPR013087 -
Ahy9g1937 593 MobiDBLite consensus disorder prediction 312 359 - -
Ahy9g1937 593 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 11 83 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Ahy9g1937 593 MobiDBLite consensus disorder prediction 341 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy9g1937 Ahy-Chr9 106116833 106122107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy9g1937 14 84 C2H2 Transcription Factor Family AT4G04885 53.247 2.50e-16 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy9g1937 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy9g1937 K14400 - aip:107640327 640.573