Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy9g1908 ATGGAAACACCAGAGGAACTCACCTTGGGTTCCAAAGACCATACCAACATTGTCAAAGGCAAGAGAACAAAGAGGGTAAGGCCTCAATCCCCCATCCCCTTCTCCGTCGCGGCAGCAGAAGAAGAAGGAGGGGAGAATAATATACCATCGCAACAACAAGAAGAAGAAAAAGAAGATATTATTTACAATGCGAATGCGAATGGCAACACAGCAACTACTTCTTCCGTGGGTCCACGAGACAGCACGGAAGAAGAGGAGGACATGGCCAACTGCCTCATCCTGTTAGCACAAGGACAATCCAGGGAATCCCCAAGACGCCCGGCCGCCGTAGCAGAAGAAGAAGGAGGAGGAACAAGCTACAACAAGTACAGCAGTAGGAAGTTTCTAGAAGCTGCCGGAGTCGGCGTTGGGTACGGAGGAGGAAGAACAGGAGGATATTATGTATACGAGTGCAAAACATGTAACAGGACATTTCCATCTTTTCAAGCACTTGGTGGACACAGGGCAAGCCACAAGAAACCCAAGGCCGCCATTCCTGCAATCTCCATTCACCAAGAAAGAAAACAACCACCGCCATTGTTCTCCTCCGACGAAGAAGAGTTCCAATTCAAGAACACCACCGCCAACAAATCAAGCTTCCTCCAGTTGAACACAAGAGGGAATAATTTGTATAGCAATAACAATAACAAATCCAAGGTTCACGAATGTTCCATTTGCGGAGCTGAATTTACATCTGGACAGGCACTTGGTGGACATATGAGGCGGCACCGAGCTCCGGTGGGGACTAACACTAACACTAACACTAACACCACGCTTTCGCTGACCACCACCACCACGGCGGCCGCGATGGAAGCAGATGAGGAGCAGCCTAAGAAGAAGACGAAGGTGTTGTCTTTGGATTTGGATCTCAACCTTCCGGCACCGGAAGATCAAGATCAAAGGGAATCCAAGTTTGCCTTTGTATCCAAGCAACCACCAACGCAACCGCAACCGCAACCGCAGAAGCAGCAACCACAAACAAGTCTTGTCTTCTCTACTACACCAGCTTTGGTGGATTGTCATTACTGA 1068 0.4888 METPEELTLGSKDHTNIVKGKRTKRVRPQSPIPFSVAAAEEEGGENNIPSQQQEEEKEDIIYNANANGNTATTSSVGPRDSTEEEEDMANCLILLAQGQSRESPRRPAAVAEEEGGGTSYNKYSSRKFLEAAGVGVGYGGGRTGGYYVYECKTCNRTFPSFQALGGHRASHKKPKAAIPAISIHQERKQPPPLFSSDEEEFQFKNTTANKSSFLQLNTRGNNLYSNNNNKSKVHECSICGAEFTSGQALGGHMRRHRAPVGTNTNTNTNTTLSLTTTTTAAAMEADEEQPKKKTKVLSLDLDLNLPAPEDQDQRESKFAFVSKQPPTQPQPQPQKQQPQTSLVFSTTPALVDCHY* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy9g1908 355 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 11 355 - -
Ahy9g1908 355 ProSitePatterns Zinc finger C2H2 type domain signature. 236 256 IPR013087 -
Ahy9g1908 355 MobiDBLite consensus disorder prediction 98 118 - -
Ahy9g1908 355 ProSiteProfiles Zinc finger C2H2 type domain profile. 149 176 IPR013087 -
Ahy9g1908 355 SUPERFAMILY beta-beta-alpha zinc fingers 148 256 IPR036236 -
Ahy9g1908 355 SMART c2h2final6 149 171 IPR013087 -
Ahy9g1908 355 SMART c2h2final6 234 256 IPR013087 -
Ahy9g1908 355 ProSiteProfiles Zinc finger C2H2 type domain profile. 234 256 IPR013087 -
Ahy9g1908 355 ProSitePatterns Zinc finger C2H2 type domain signature. 151 171 IPR013087 -
Ahy9g1908 355 MobiDBLite consensus disorder prediction 63 78 - -
Ahy9g1908 355 MobiDBLite consensus disorder prediction 1 86 - -
Ahy9g1908 355 Pfam C2H2-type zinc finger 148 174 - -
Ahy9g1908 355 Pfam C2H2-type zinc finger 233 259 - -
Ahy9g1908 355 Gene3D Classic Zinc Finger 147 256 - -
Ahy9g1908 355 MobiDBLite consensus disorder prediction 302 344 - -
Ahy9g1908 355 PANTHER ZINC FINGER PROTEIN ZAT5 11 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy9g1908 Ahy-Chr9 105428231 105429642 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy9g1908 1 355 C2H2 Transcription Factor Family AT5G04390 42.416 1.33e-77 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy9g1908 zf-C2H2_6 7.10E-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy9g1908 - - gmx:100799383 362.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g2334 19 137443075 137444714 Ahy9g1908 9 105428231 105429642 hybridization