Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy9g1880 ATGAACAACACTTCCAATTCTACTGAGGACTCTCAAGAGGACATAACCGGATACACGTATTATTCGGTTTCTTTGTCTCTTGGCTTCCTCCTCTTGATGGCATTCATAGCTCTCACTGCATACTACTGCAGCAAAAGCAGGATTCGAGACGAGCGAACCGGACCAAGCTCCGGAAGAACCAATAGCAGTTTCAATTCAAACAGGACAGTGATCATGGACAGAGACCCATCCTCTATAACAATCCAAATTGGTGAGGAGCAACAACAAATGCAAGAATCAATCCTCAAAAGTTATCCTATGTTGTTGTTCTCCCAAGCCAAGCTTCATCAAAAGGCAGATGATCCAACAGAACTTCTTAGTTGCTCAATATGTTTGGCAGATTATGCAGACTCAGAGTGGTTACGGCTATTACCTGATTGTGGCCATTTTTTTCATAGGGATTGTATTGATGTATGGTTGAGGCTAAACCTTTCTTGTCCAATGTGTAGGAACTCTCCATTACCCACCCCTCTTGCTGAAGTTGCTCCCTTGGCCGCTACAAGGGCTTATTGA 552 0.4366 MNNTSNSTEDSQEDITGYTYYSVSLSLGFLLLMAFIALTAYYCSKSRIRDERTGPSSGRTNSSFNSNRTVIMDRDPSSITIQIGEEQQQMQESILKSYPMLLFSQAKLHQKADDPTELLSCSICLADYADSEWLRLLPDCGHFFHRDCIDVWLRLNLSCPMCRNSPLPTPLAEVAPLAATRAY* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy9g1880 183 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 167 IPR013083 -
Ahy9g1880 183 SUPERFAMILY RING/U-box 95 166 - -
Ahy9g1880 183 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 1 173 - -
Ahy9g1880 183 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 173 IPR045899 -
Ahy9g1880 183 SMART ring_2 121 162 IPR001841 -
Ahy9g1880 183 Pfam Ring finger domain 120 163 IPR001841 -
Ahy9g1880 183 CDD RING-H2_PA-TM-RING 121 163 - -
Ahy9g1880 183 ProSiteProfiles Zinc finger RING-type profile. 121 163 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy9g1880 Ahy-Chr9 104751683 104752682 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy9g1880 11 178 C3H Transcription Factor Family AT5G06490 34.831 1.58e-32 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy9g1880 - - adu:107466513 358.607