Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy9g1878 ATGTCCAATAATTCCACTTCTCAATCAAAAGATGGTTTTGATGCTAGTGGTTTCACATATGGCGTAGCATTCATACTAGGTTTGATCTTCTTACTTGCTACCATAGCTTTCGCATGTTTCCGCATTCGCAGAATTCGAATTCCTAACATATTTAACATAGTAGCCGGTGTTCCTCCATCGTCACAATCTCATCAAACATTGGAACACCACGTGGATATTCGTATCGACACGAGTTATGAGAATTACCCTAAGATGCCATATTCCGATGAGGTAAAGAACAAAAATAATGTTGTGGGTGGATGCACCATATGCTTAGGAGACTATAAAGAGAGTGAGATGTTGAGGGTTCTTCCTGGTTGTGGCCATGCCTTTCACCAACCTTGTGTTGATCCATGGCTCATGTTGCACTCCACATGTCCCATATGCCGAAAATCATTGCCTACTCAAGCTCCATAG 456 0.4189 MSNNSTSQSKDGFDASGFTYGVAFILGLIFLLATIAFACFRIRRIRIPNIFNIVAGVPPSSQSHQTLEHHVDIRIDTSYENYPKMPYSDEVKNKNNVVGGCTICLGDYKESEMLRVLPGCGHAFHQPCVDPWLMLHSTCPICRKSLPTQAP* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy9g1878 151 PANTHER RING-H2 FINGER PROTEIN ATL71-RELATED 9 147 - -
Ahy9g1878 151 Pfam Ring finger domain 101 143 IPR001841 -
Ahy9g1878 151 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Ahy9g1878 151 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 149 IPR013083 -
Ahy9g1878 151 SMART ring_2 101 142 IPR001841 -
Ahy9g1878 151 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 9 147 IPR045899 -
Ahy9g1878 151 CDD RING-H2_PA-TM-RING 101 143 - -
Ahy9g1878 151 SUPERFAMILY RING/U-box 82 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy9g1878 Ahy-Chr9 104678434 104679284 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy9g1878 17 150 C3H Transcription Factor Family AT5G06490 31.013 3.83e-24 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy9g1878 - - adu:107466507 249.595