Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy9g1803 ATGGAGCAGGAAGAACACGAAGTGTACGGTGCCGACATCCCCGACGAAGCTGACATGGACGCCGACGCCGACCTTCAGGAACACGATGACGACCATGACAACAACCACCATGCCTCCTCTCACGCTAACAAGGACTTGGAGGACATGAAGAAGAGGCTGAAGGAGATTGAGGAAGAAGCTAGCGCCCTACGTGAAATGCAGGCCAAGGTCGAGAAAGAGATGGGCGCTGTTCAAGATTCAACTGGATCTTCTGCAAGTCAAGCTGAAAAGGAGGAAGTGGATTCTCGATCAATCTATGTTGGTAATGTTGACTATGCATGCACACCTGAAGAAGTTCAACAGCATTTTCAGTCGTGTGGAACTGTGAACAGAGTTACAATATTGACAGACAAATTTGGGCAGCCAAAAGGATTTGCTTATGTAGAGTTCGTTGAGATAGATGCTGTTCAGAATGCTCTCCTGTTAAATGAATCAGAATTGCATGGTCGACAACTGAAGGTGTCTGCTAAGCGTACAAATGTTCCTGGGATGAAACAGTATTTTGGAAGACGACCTGGGGGTTTCCGATCCAGGAGGCCTTTCATGCCTGCTCCATTCTATCCACCATATGGTTATGGAAGGGTCCCAAGGTTTAGAAGACCTACTCGATACAGGCCATACTAG 663 0.4751 MEQEEHEVYGADIPDEADMDADADLQEHDDDHDNNHHASSHANKDLEDMKKRLKEIEEEASALREMQAKVEKEMGAVQDSTGSSASQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYFGRRPGGFRSRRPFMPAPFYPPYGYGRVPRFRRPTRYRPY* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy9g1803 220 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 166 IPR000504 GO:0003723
Ahy9g1803 220 MobiDBLite consensus disorder prediction 1 94 - -
Ahy9g1803 220 CDD RRM_II_PABPs 97 168 - -
Ahy9g1803 220 Gene3D - 13 178 IPR012677 -
Ahy9g1803 220 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 172 IPR000504 GO:0003723
Ahy9g1803 220 Coils Coil 39 73 - -
Ahy9g1803 220 MobiDBLite consensus disorder prediction 28 72 - -
Ahy9g1803 220 SUPERFAMILY RNA-binding domain, RBD 86 193 IPR035979 GO:0003676
Ahy9g1803 220 PANTHER POLYADENYLATE-BINDING PROTEIN 1-LIKE 3 219 - -
Ahy9g1803 220 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 3 219 - -
Ahy9g1803 220 SMART rrm1_1 97 168 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy9g1803 Ahy-Chr9 102780570 102784823 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy9g1803 97 168 Eukaryotic Initiation Factors Gene Family AT2G36660 38.158 6.57e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy9g1803 K14396 - gmx:100527545 338.191