Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy9g1768 ATGGATTCGGATCAGGGGAAGCTATTCATCGGAGGGATTTCGTGGGACACCAATGAGGACAAGTTGAAGGACCATTTCTGCAACTATGGTGACGTCACCAACGCCTCCGTCATGAGGGACAAGAACACCGGCAAGCCCAGAGGCTTCGCCTTTGTTGAATTCGCCGATCCCTCTGTTCTCGATAGGGTCCTCCAAGATAAGCATGTCATTGATGGCAGAACGGTTGATGCTAAGAGGGCCTTATCAAGAGAGGATCAACAAGTTTCTGTCACTTCAAGAGGTGGAAATTCTCATTCTGGTTGGAATTCTGGTGGAAATGGTGGAAACACGAGGACCAAGAAGATATTTGTTGGAGGGTTGCCTCCCACACTGACAGAGGAAAAATTTCGTCAATACTTTGAGTCATATGGTCATGTAACTGATGTAGTAGTTATGTTTGACCAGAATACTGGACGACCACGTGGATTTGGTTTTATTTCATTTGACAATGAGGAGGCAGTTGATAGGGTTTTGCACAAGACATTTCATGATTTATATGGTAAGCAAGTAGAGGTGAAGCGTGCACTTCCTAAAGATGCCAATCCTGGTTCAACTGGCCGTGGTGGAGGTGGTGGCGCAGGAGGGTATCAAGGGTATGGATCATCTGGTGGCAGCCAGAATGCTTATGATGGTCGTATGGATTCTAGTAGGTATATTCAGCCTCAAAGTGCTGCTGGTGGATTCCCACCTTATGGTTCTGCTGGCTATAGTGCGCCTGGGTATGGTTATGGTCCAGCCAATAATGGCATTGGCTACGGTGCATATGGAAGTTATGGTGGTGTTGCTGCTGGGTATGGTGGAGCTGGCAGTGCAGCTTATGGGAATCCAAATGTTGCTAACGCTGCTTACACTGGTGGTGCACCTGGTGGTCCAAGGAGTTCATGGCCTGCTCAGGCTGCTTCTGGCTATGGGTCTATGGGCTATGGGAACACTGCTGCGTGGGGTGCTCCAGGTGGCGTTGCTGGATCTGGCGGCAGTGGTCCTGGTTCAGCAACTGCAGGTCAATCTCCTGGCGGAGCTGCTGGCTACGGGAATCAAGGATATGGATATGGTGGGTATGGTAGTGATAGTTCTTATGGGAATCCCAGCGGATATGGTGCTGTTGGAGGGCGTACTGGGGGTACCCCAAATAGTAATTCTAGCAATGCTGGTGGGAATGAACTACAAGGTAGTGGTGGCAGTGGGAGCTATATGGGAAGTGGTTATGGGGATGCAAATGGACATTCAAGTTATGGAAATGCTGGTTGGAGATCTGAACAAACTCAACGGTCTGGAAACTATGGGACTCCTCAGGGAAATGGCTCTCATGGTGGGCAAGTTGGTTATGGTGGTGGGTATGCTGGTGCTCAGTCACGACAAGCTCAACAACAGTAA 1413 0.4933 MDSDQGKLFIGGISWDTNEDKLKDHFCNYGDVTNASVMRDKNTGKPRGFAFVEFADPSVLDRVLQDKHVIDGRTVDAKRALSREDQQVSVTSRGGNSHSGWNSGGNGGNTRTKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMFDQNTGRPRGFGFISFDNEEAVDRVLHKTFHDLYGKQVEVKRALPKDANPGSTGRGGGGGAGGYQGYGSSGGSQNAYDGRMDSSRYIQPQSAAGGFPPYGSAGYSAPGYGYGPANNGIGYGAYGSYGGVAAGYGGAGSAAYGNPNVANAAYTGGAPGGPRSSWPAQAASGYGSMGYGNTAAWGAPGGVAGSGGSGPGSATAGQSPGGAAGYGNQGYGYGGYGSDSSYGNPSGYGAVGGRTGGTPNSNSSNAGGNELQGSGGSGSYMGSGYGDANGHSSYGNAGWRSEQTQRSGNYGTPQGNGSHGGQVGYGGGYAGAQSRQAQQQ* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy9g1768 470 MobiDBLite consensus disorder prediction 84 110 - -
Ahy9g1768 470 SMART rrm1_1 7 78 IPR000504 GO:0003723
Ahy9g1768 470 SMART rrm1_1 114 186 IPR000504 GO:0003723
Ahy9g1768 470 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Ahy9g1768 470 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 172 IPR000504 GO:0003723
Ahy9g1768 470 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 468 - -
Ahy9g1768 470 MobiDBLite consensus disorder prediction 424 449 - -
Ahy9g1768 470 MobiDBLite consensus disorder prediction 80 112 - -
Ahy9g1768 470 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Ahy9g1768 470 MobiDBLite consensus disorder prediction 377 470 - -
Ahy9g1768 470 MobiDBLite consensus disorder prediction 189 226 - -
Ahy9g1768 470 Gene3D - 4 88 IPR012677 -
Ahy9g1768 470 MobiDBLite consensus disorder prediction 385 409 - -
Ahy9g1768 470 MobiDBLite consensus disorder prediction 212 226 - -
Ahy9g1768 470 CDD RRM2_DAZAP1 111 190 IPR034131 GO:0003723
Ahy9g1768 470 SUPERFAMILY RNA-binding domain, RBD 112 218 IPR035979 GO:0003676
Ahy9g1768 470 Gene3D - 108 228 IPR012677 -
Ahy9g1768 470 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 190 IPR000504 GO:0003723
Ahy9g1768 470 SUPERFAMILY RNA-binding domain, RBD 3 109 IPR035979 GO:0003676
Ahy9g1768 470 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy9g1768 Ahy-Chr9 101288599 101291710 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy9g1768 8 185 Eukaryotic Initiation Factors Gene Family AT2G23350 21.809 4.63e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy9g1768 K14411 - gmx:100786882 541.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g2178 19 131422109 131425232 Ahy9g1768 9 101288599 101291710 hybridization