Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy9g1767 ATGGATTCAGATCAGGGGAAGCTATTTATCGGGGGGATTTCTTGGGACACCAACGAGGACAAGCTGAAGGACCATTTCTGCAACTATGGTGACGTCACCAACGCCTCCGTTATGAGGGATAAGAACACCGGCAAGCCCAGAGGCTTCGGCTTCGTTGAATTCGCCGATCCCTCTGTTCTCGACAGGGTCCTCCAAGATAAGCACGTCATCGATGGTAGAACGGTTGATGCTAAGAGGGCCTTATCAAGAGAGGATCAACAAATTTCTGTCACTTCCAGAGGTGGAAATTCCCATTCTGGTTGGAATTCTGGTGGAAATGGTGGAAATATGAGGACGAAAAAGATATTTGTTGGAGGGTTACCTCCCACACTGACTGAGGAAAAATTTCGTCAGTATTTTGAGTCGTATGGTCATGTAACTGACGTAGTAGTTATGTTCGACCAGAATACTGGACGACCACGTGGATTTGGTTTTATTTCTTTTGACACTGAAGAGGCAGTTGATAGAGTTTTGCACAAGACCTTTCATGATTTATACGGTAAGCAAGTAGAAGTGAAGCGTGCACTTCCAAAAGATGCCAATCCTGGTGCAAGTGGCCGTGGTGGCGGTGGCGGCGGCGGTGCCGGAGGCTATCAGGGTTATGGGTCATCTGGTGGCAACCAGAATGCTTACGATGGCCGTATGGATTCTAATAGGTATATGCAACCTCAAAGCACTGCAGGTGGTTTTCCACCTTACGGTTCTGCTGGCTATAGTGCGCCTGGATATGGCTATGGTCCAGCTAATAATGGTATGGGCTATGGTGCATACGGAAGTTATGGTGGTGCTGCTGCTGGGTATGGTGGAGCAGCTGGGGCAGCATACGGGAATCCAAATGTTGCTAATGCTGCTTATGCCGGTGGTCCACCAGGTGGTCCAAGGACTTCATGGCCAGCTCAGGCTGCTTCTGGTTATGGGTCTATGGGCTATGGGAACACAGCTGCATGGGGTGCACCAAGTGGTGGTGCTGGCTCTGTTGGTGGTGGCCCTGGTTCAGCAACTGCAGGTCAATCCCCCAGTGGAGCTGCTGGATATGGGAATCAAGGATATGGATATGGCGGGTACGGTGGGTATAGTGGAAGTGATAGTTCTTATGGGAACCCCGGTGGATATGGTGCTGTTGGAGGGCGTACTGGGAGTACCCCAAATAGCAATGCCAGCGGTGCTGGTGGGAGTGAACTACAAGGTAGTGGTGGCAGCGGCAGCTATATGGGCGGTGGCTATGGGGAGGCTAATGGAAATTCAGGTTATGGAAATGCTGGTTGGAGATCTGAACAAGCTCAAGGTTCTGGAAACTATGGGACTTCTCAGGGGGCTCATGGTGGGCAAGTTGGTTATGGTGCTGGATATGGTGGTGCTCAGTCTTGA 1407 0.5068 MDSDQGKLFIGGISWDTNEDKLKDHFCNYGDVTNASVMRDKNTGKPRGFGFVEFADPSVLDRVLQDKHVIDGRTVDAKRALSREDQQISVTSRGGNSHSGWNSGGNGGNMRTKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMFDQNTGRPRGFGFISFDTEEAVDRVLHKTFHDLYGKQVEVKRALPKDANPGASGRGGGGGGGAGGYQGYGSSGGNQNAYDGRMDSNRYMQPQSTAGGFPPYGSAGYSAPGYGYGPANNGMGYGAYGSYGGAAAGYGGAAGAAYGNPNVANAAYAGGPPGGPRTSWPAQAASGYGSMGYGNTAAWGAPSGGAGSVGGGPGSATAGQSPSGAAGYGNQGYGYGGYGGYSGSDSSYGNPGGYGAVGGRTGSTPNSNASGAGGSELQGSGGSGSYMGGGYGEANGNSGYGNAGWRSEQAQGSGNYGTSQGAHGGQVGYGAGYGGAQS* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy9g1767 468 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 172 IPR000504 GO:0003723
Ahy9g1767 468 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Ahy9g1767 468 MobiDBLite consensus disorder prediction 390 411 - -
Ahy9g1767 468 MobiDBLite consensus disorder prediction 427 468 - -
Ahy9g1767 468 MobiDBLite consensus disorder prediction 189 239 - -
Ahy9g1767 468 Gene3D - 4 88 IPR012677 -
Ahy9g1767 468 SUPERFAMILY RNA-binding domain, RBD 3 108 IPR035979 GO:0003676
Ahy9g1767 468 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Ahy9g1767 468 SMART rrm1_1 7 78 IPR000504 GO:0003723
Ahy9g1767 468 SMART rrm1_1 114 186 IPR000504 GO:0003723
Ahy9g1767 468 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 467 - -
Ahy9g1767 468 CDD RRM2_DAZAP1 111 190 IPR034131 GO:0003723
Ahy9g1767 468 MobiDBLite consensus disorder prediction 214 239 - -
Ahy9g1767 468 MobiDBLite consensus disorder prediction 430 452 - -
Ahy9g1767 468 SUPERFAMILY RNA-binding domain, RBD 112 220 IPR035979 GO:0003676
Ahy9g1767 468 Gene3D - 108 228 IPR012677 -
Ahy9g1767 468 MobiDBLite consensus disorder prediction 81 109 - -
Ahy9g1767 468 MobiDBLite consensus disorder prediction 389 411 - -
Ahy9g1767 468 MobiDBLite consensus disorder prediction 84 109 - -
Ahy9g1767 468 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Ahy9g1767 468 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 190 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy9g1767 Ahy-Chr9 101248567 101252367 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy9g1767 8 200 Eukaryotic Initiation Factors Gene Family AT2G23350 23.153 4.48e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy9g1767 K14411 - gmx:100811267 516.538