Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy9g1640 ATGGAGACTCATGGCAACATAGTGACAGCCGTCATCTTCTTACTTTCATCAATTCAAAGAGTGAAGGTGATGGTTGATTTGATGTTTGAGAGAAGGGGTGGAATGGTTGATGTTATCATCCCTGGATATGAGGAAGATTTCAAATGTAAGATCATTCCTCCACGTGAGGCCTGGAGGATCAAAGTCAGGGTACTAAGGGCTTGGACTGTACCTAGCTTTGGTAATGCAGATGTTCCAAATTCAATGGAACTTATTCTGGTTGATGAAAATTCTACCAAAATCCAGGCCACTATAAGGAAGCAACTAATACACAAATTTAAAGATCATCTTCTTGAAGGCAGTTGTTATAAGATGAGTTATTTTGCTGTTGTTTCAAACCAAGGCTCTTATAGAGCTACAAAGCATGAGTTCAAACTCATTTTTCTATTTCGTACAACAGTGACAACAATTCCTGATGATATAATACCCAAGTCTTGTTTTTCTATATATCCCTTTGAAGACATATTGCAAATGAGTCAGGATCATGACTATTTAGTTGATGTAATTGGTCTTTTGACATTGGTTGGGGAAGAGAAAAACTATGACAGGGATGGTAAAACGGTTAAGATGGTTGTTGTCGAACTTTCTTCACAAAAGATGATGCTGCGATGCGCATTATTTGGAGAGTACGTGGACCAGTTAAATGATTTTCTTGCTTCTGGTTATGTTGAGCAACCGGTTGTCATTGTTCAACTTGCTAAGATTAAACTTTTTCGAGGTCAACCTGGTCTCCAGAATGTTATGAAAGCAACAAAAATTTACTTTAATCCTGATTTGTCAGAAGTTATTGATTTTCGAAAAAGCATGGTCGAACAAGGAATTAATGGCACTCAACCTTTATTCATTGCGAATGAGGGAAAATCCGTTTCATTGGAGGATGACTTCATGCGCCTAACTAGGCGATCCACAATAGATCAATTACATGATAACAAAGAGGATGGGAGTTTTGTTATTATGGGTACTATCACTGATATTGTTGAAGAGGGCTGTTGGTGGTATTCCACTTGTGTGTGTGGAAAGGCAGTTTATCCTGAGTCTGGGGTCTATTTCTGTGATGTTTGCATGCATCATGTGACAAATGTGATTCCAAGGTTCAGACTTAAAGTAGCAGTTTCTGATCATACTGGACAAGGCATATTCGTTTTGTTTGATCGTGAAACAGCTTATTTGCTTAAAAAAGCATGTGCTGACCTTTTTAATGAAGTCCAAAAGGAGTCAACTGTTCTGTGTGGAGATAGCTATTCTATTACATTTAAAACTTTAGAGGGTAAAAAAGTTTTACTAAAAGTAGATACCAAGTCCCTTGGTATAGACAAATACTTTGGAACCTTTCGTGTAAAAAGGATATGTGATGACCCAACTATTATTTCTATGTTTGAGCTTGCTGAGAATGAGAACGAAGTGACACCTGTCAAGGATGCACATGTTCCTGGGATTGGTTTGGACATAGGTGAACCCTCTTATACACAGCCTACTTCAAAAGATGTTAAGCTTTCAGTCTTGGATAAGGATGAAAGTGTTCCTGGTCTTGATGACATTTCGATAGATATGGACGCTAATAGGAAATCTGTTGTTCCTCAAGTTTCTGGCGATAATGATGAGAATCAGGTCTTTAGTGATGAAGTTGGCTCATTGCTCAACTCAGGTGTTGAAGAAACTCAGGACTTCCTATCTCATCTTCTGGATAATTCGGACAACACTGATGTTTCTTTTATTTGCAATGATGTTGTGCGTTCCAAAGTAAAGAGAAACCTTGAATCAGATTTTCAGAAAGCCTTGGAGGAAACTGTTGGTCCTTCATCAAATATGATCAAGATTGAAGATAATTTGGATGGATAG 1878 0.3797 METHGNIVTAVIFLLSSIQRVKVMVDLMFERRGGMVDVIIPGYEEDFKCKIIPPREAWRIKVRVLRAWTVPSFGNADVPNSMELILVDENSTKIQATIRKQLIHKFKDHLLEGSCYKMSYFAVVSNQGSYRATKHEFKLIFLFRTTVTTIPDDIIPKSCFSIYPFEDILQMSQDHDYLVDVIGLLTLVGEEKNYDRDGKTVKMVVVELSSQKMMLRCALFGEYVDQLNDFLASGYVEQPVVIVQLAKIKLFRGQPGLQNVMKATKIYFNPDLSEVIDFRKSMVEQGINGTQPLFIANEGKSVSLEDDFMRLTRRSTIDQLHDNKEDGSFVIMGTITDIVEEGCWWYSTCVCGKAVYPESGVYFCDVCMHHVTNVIPRFRLKVAVSDHTGQGIFVLFDRETAYLLKKACADLFNEVQKESTVLCGDSYSITFKTLEGKKVLLKVDTKSLGIDKYFGTFRVKRICDDPTIISMFELAENENEVTPVKDAHVPGIGLDIGEPSYTQPTSKDVKLSVLDKDESVPGLDDISIDMDANRKSVVPQVSGDNDENQVFSDEVGSLLNSGVEETQDFLSHLLDNSDNTDVSFICNDVVRSKVKRNLESDFQKALEETVGPSSNMIKIEDNLDG* 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy9g1640 625 Gene3D - 154 290 IPR012340 -
Ahy9g1640 625 CDD RPA1_DBD_A_like 59 147 - -
Ahy9g1640 625 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 52 412 - -
Ahy9g1640 625 SUPERFAMILY Nucleic acid-binding proteins 160 282 IPR012340 -
Ahy9g1640 625 PANTHER REPLICATION FACTOR A 1, RFA1 52 412 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ahy9g1640 625 SUPERFAMILY Nucleic acid-binding proteins 312 464 IPR012340 -
Ahy9g1640 625 Pfam Replication factor-A C terminal domain 330 444 IPR013955 -
Ahy9g1640 625 Pfam Domain of unknown function DUF223 83 178 IPR003871 -
Ahy9g1640 625 SUPERFAMILY Nucleic acid-binding proteins 51 153 IPR012340 -
Ahy9g1640 625 Gene3D - 49 152 IPR012340 -
Ahy9g1640 625 CDD RPA1_DBD_B_like 180 282 - -
Ahy9g1640 625 CDD RPA1_DBD_C 319 460 IPR013955 -
Ahy9g1640 625 Gene3D - 303 467 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy9g1640 Ahy-Chr9 91405310 91409394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy9g1640 53 389 Core DNA Replication Machinery Family AT2G06510 23.481 7.24e-16 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy9g1640 - - ahf:112711209 1246.49