Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy9g1568 ATGGAGCAGCGAAAGCTTGTGGTTTTGGGTATTCCATGGGACGTGGACACTGAGGGCTTGAGGGAATACATGAGCAAGTACGGTGAATTGGAAGATTGTATTGTCATGAAGGAGCGATCAACTGGACGATCTCGTGGATTTGGATATGTTACATTTGCTTCAGTGGATGATGCTAAGGATGTTCTATCAGGTGAACATGTTCTTGGCAACAGGATGCTGGAGGTCAAAGTGGCCACACCAAAGGAGGAGATGAGAGCACCAGCCAAAAAAGTAACCAGAATATTTGTAGCCAGGATTCCACAATCAGTAACAGAAGCATCTTTTAGAAGTCATTTTGAGAAATATGGTGATATAACAGATCTGTACATGCCAAAGGATCAAGGATCAAAAATGCATCGTGGAATTGGTTTTATCACCTTTGCAAGTGCAGATTCTGTCGAGAGTTTGATGGCAGAAACCCACGAACTGGGAGGTTCTACCGTGGTGGTTGATCGAGCTACACCCAAGGATGATGACTTCAAGCCAGTAGGCAGGATGCCACAGGGAGGGTATGGTGCATATAATGCTTATATTTCTGCAGCAACTAGATATGCAGCACTTGGTGCTCCTACTTTGTATGATCATCCAGGCCCAGTCTACGGAAGGGGAGAACCATCTCGTGGAATTGGTAAGAAGATTTTTGTTGGCCGACTTCCTCCAGAGGCAACTTCTGAGGATCTTCGTCAATATTTTGGAAGATTTGGCCGTATATTAGATGTTTATGTTCCCAGGGATCCTAAGAGATCAGGTCATAGAGGTTTTGGATTTATTACTTTTGCCGAAGATGGTGTAGCAGATCGTGTCTCACGAAGGCCCCATGAAATTTGTGGACAACAGGTAGCATTAGATTCAGCCACACCTGTTGATGATGCAAGTCCAAGTGGGAATTTTATGATGAATGGTGTGGGTTCTTTTGGGGGTTATGGAGGTCCTATGCGAAGTTATGGGAGGATGTATGGTAGCCTGGACTTCGATGATTGGGGTTATGGAATTCCCAGTGGGAGGCCATCAAGAGCAGATTGGAGGTATAGACCATACTAG 1080 0.45 MEQRKLVVLGIPWDVDTEGLREYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKDVLSGEHVLGNRMLEVKVATPKEEMRAPAKKVTRIFVARIPQSVTEASFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFASADSVESLMAETHELGGSTVVVDRATPKDDDFKPVGRMPQGGYGAYNAYISAATRYAALGAPTLYDHPGPVYGRGEPSRGIGKKIFVGRLPPEATSEDLRQYFGRFGRILDVYVPRDPKRSGHRGFGFITFAEDGVADRVSRRPHEICGQQVALDSATPVDDASPSGNFMMNGVGSFGGYGGPMRSYGRMYGSLDFDDWGYGIPSGRPSRADWRYRPY* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy9g1568 359 SUPERFAMILY RNA-binding domain, RBD 3 85 IPR035979 GO:0003676
Ahy9g1568 359 Gene3D - 1 83 IPR012677 -
Ahy9g1568 359 SUPERFAMILY RNA-binding domain, RBD 224 325 IPR035979 GO:0003676
Ahy9g1568 359 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Ahy9g1568 359 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 168 IPR000504 GO:0003723
Ahy9g1568 359 PANTHER OS01G0945800 PROTEIN 3 359 - -
Ahy9g1568 359 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 63 IPR000504 GO:0003723
Ahy9g1568 359 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 226 279 IPR000504 GO:0003723
Ahy9g1568 359 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 152 IPR000504 GO:0003723
Ahy9g1568 359 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 3 359 - -
Ahy9g1568 359 Gene3D - 223 304 IPR012677 -
Ahy9g1568 359 Gene3D - 84 174 IPR012677 -
Ahy9g1568 359 SUPERFAMILY RNA-binding domain, RBD 89 187 IPR035979 GO:0003676
Ahy9g1568 359 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 224 300 IPR000504 GO:0003723
Ahy9g1568 359 SMART rrm1_1 93 164 IPR000504 GO:0003723
Ahy9g1568 359 SMART rrm1_1 225 296 IPR000504 GO:0003723
Ahy9g1568 359 SMART rrm1_1 5 76 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy9g1568 Ahy-Chr9 85064434 85068892 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy9g1568 5 86 Eukaryotic Initiation Factors Gene Family AT2G23350 35.714 3.53e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy9g1568 K14411 - gmx:100795240 677.167