Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy9g1440 ATGGAAGTTATGTCTTTTTCTGTCACATTCACCCAATTTCATACATTTTCCTTTCTGAAACCAAAAGTAACAACAACCGAAATTCAGGGCCTTTCACTACCCAATAATAGGAGCAAACATTGCAATCTTTATTCATTTTCTTCTTCATCTTCAAGAAGTATAGCAGCAACAGCAACACTATACCCTTCCACCACCCAGAAGAACCGCTACTGGATGGTACTCATGGAGCCTCCACCTCATGGTGTCACCTCCAAGTCACAACTCATCGATTATTACGCCAACACTCTACACAAAGTCCTTGCCAGTGAGAGAGATGCTCAAATGTGTATATATGATGCTTCCTGCGATACACACTTTGGTTTCTGTTGTGACATTGATCCACAAATAACCTCCCAACTCACAAGTTTACCGGGGGTCTTGTTGGTTAGGCCTGATCCGGATTTCAGTTCTTCGAAAAAGGACTATAGTCTATCAAGTGGTCAAGAAGGTCTGCTATCGAATTCAAAACTACAATTTGAAACCAACATGTTATTCTTTCTTGAGAATTCAAAGCATTGGCTTGTTAGAATTGATAAACCTGCTGTTGGGATTGTTACAAAGGCTCAGATTGTCGATTATTTTGTTCAAATATTGACCAAGGTGATGGGAAATGAAAAGGATGCTCAGATGTGCATATATCATGTTTCCTGGAAAAAAATATTTGGTTTTTGCTGTGAACTTGATGACGACTGTGCACAGGAGTTAGTTGGTGTGCCTGGTGTCTTATCAGTTCAACCAGATAATAATTTTGAGTCAGCAAATAAGGATTATGAAGGTAATAACTTAGAAAACAGTTTGAGTGTGCAAAAATCTTTTGAAACAAGTCAGGCAGCTCCCCTGCAAACGAAAAAGCTTTTTGTGACAGGGCTATCGTTTTATACATCTGAGAAAACCTTACGTGCAGCATTTGAAGGCTTTGGTGATCTTGTTGAAGTCAAAATTATTATGGATAAAATTTCCAAAAGGTCCAAGGGTTATGCATTTGTTGAGTACACCACGGAGGAGGCTGCAAGCGCAGCATTGAAAGAGATGAATGGCCAGATTATTAATGGATGGATGATAGTAGTGGATGTTGCCAAGACTAACCCGCCAAGGCACAACAGGGGTCATGTCAGGCCATCAGTTTGA 1167 0.401 MEVMSFSVTFTQFHTFSFLKPKVTTTEIQGLSLPNNRSKHCNLYSFSSSSSRSIAATATLYPSTTQKNRYWMVLMEPPPHGVTSKSQLIDYYANTLHKVLASERDAQMCIYDASCDTHFGFCCDIDPQITSQLTSLPGVLLVRPDPDFSSSKKDYSLSSGQEGLLSNSKLQFETNMLFFLENSKHWLVRIDKPAVGIVTKAQIVDYFVQILTKVMGNEKDAQMCIYHVSWKKIFGFCCELDDDCAQELVGVPGVLSVQPDNNFESANKDYEGNNLENSLSVQKSFETSQAAPLQTKKLFVTGLSFYTSEKTLRAAFEGFGDLVEVKIIMDKISKRSKGYAFVEYTTEEAASAALKEMNGQIINGWMIVVDVAKTNPPRHNRGHVRPSV* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy9g1440 388 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 296 374 IPR000504 GO:0003723
Ahy9g1440 388 Gene3D - 265 387 IPR012677 -
Ahy9g1440 388 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 180 264 IPR037045 -
Ahy9g1440 388 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 52 149 IPR037045 -
Ahy9g1440 388 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 298 364 IPR000504 GO:0003723
Ahy9g1440 388 SUPERFAMILY RNA-binding domain, RBD 287 384 IPR035979 GO:0003676
Ahy9g1440 388 PANTHER ORGANELLE RRM DOMAIN-CONTAINING PROTEIN 1, CHLOROPLASTIC 42 386 - -
Ahy9g1440 388 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 42 386 IPR039206 GO:0016554
Ahy9g1440 388 SMART rrm1_1 297 370 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy9g1440 Ahy-Chr9 70572501 70581788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy9g1440 296 378 C2H2 Transcription Factor Family AT2G19380 33.735 3.17e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy9g1440 - - gmx:100791652 518.85