Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ahy9g1343 | ATGGCTGCATCGTCTTCCTCAGCATCGCAATCGCATTTCACCTATTCCAACGCCCCTACCTACTTCCCCGTTCCTTTCCACCTCCAGCAATCCGCCGCCACACCGGCGAATTACGCCGCTGCGGTGTACGCTGCGGCTCCGGCAGTACAAATCCCTTCGCTTCCGGTCATCGGCCCTGTCTCTCCGGCTCCGGTTTCTGGCGTGTACTCCTTACCGCAATATCCGTCGCAGCAGTTGTTTGAGAGGGATGCGCAGATAATAACGCCGGAGGCGCTGGAGAGCGTGAAGGCGGCGATTGCGAGCAGCGAGGCGGAGAACAAGGCGCAGGCGAAGAAGAAAGCAGTTCCTCGAAAAGCTGCTGGTCAAACATGGGAGGATCCTATTCTTGCTGAGTGGCCCGAAGATGATTATCGGCTCTTTTGTGGTGACCTTGGTAATGAAGTGAATGACGATGTTCTTACCAAAGCATTTTCACGTTTCCCTTCCTTTAGCATGGCACGGCTTTCCTCGTCATTGCTCATCGTCCACAAATCAAAGTACAATTCAAATTTTTTAACGGTTGTCAGAGATAAACGGACTGGGAAAACAAAGGGCTATGGTTTTGTAAGCTTTGCCAGTCCTTCTGACCTTGCTGCTGCTCTTAAAGAAATGAATGGTAAATATGTTGGAAATCGGCCGATAAAATTAAGCAAGAGTAAGTGGAAGGAGAGAACAGATTTCGAGGCCCTGGAAAAACAGAAGCGCCAAACTCATAAGAAACCGAAGCTTCCCAGGAAGGGTGTTCTTCACAAGTGA | 795 | 0.5044 | MAASSSSASQSHFTYSNAPTYFPVPFHLQQSAATPANYAAAVYAAAPAVQIPSLPVIGPVSPAPVSGVYSLPQYPSQQLFERDAQIITPEALESVKAAIASSEAENKAQAKKKAVPRKAAGQTWEDPILAEWPEDDYRLFCGDLGNEVNDDVLTKAFSRFPSFSMARLSSSLLIVHKSKYNSNFLTVVRDKRTGKTKGYGFVSFASPSDLAAALKEMNGKYVGNRPIKLSKSKWKERTDFEALEKQKRQTHKKPKLPRKGVLHK* | 265 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ahy9g1343 | 264 | MobiDBLite | consensus disorder prediction | 240 | 264 | - | - | |
Ahy9g1343 | 264 | MobiDBLite | consensus disorder prediction | 249 | 264 | - | - | |
Ahy9g1343 | 264 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 137 | 234 | IPR000504 | GO:0003723 | |
Ahy9g1343 | 264 | PANTHER | RNA-BINDING PROTEIN 42-LIKE | 183 | 264 | - | - | |
Ahy9g1343 | 264 | PANTHER | RNA-BINDING PROTEIN 42-LIKE | 33 | 167 | - | - | |
Ahy9g1343 | 264 | CDD | RRM_RBM42 | 131 | 232 | IPR034215 | - | |
Ahy9g1343 | 264 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 186 | 228 | IPR000504 | GO:0003723 | |
Ahy9g1343 | 264 | SMART | rrm1_1 | 138 | 230 | IPR000504 | GO:0003723 | |
Ahy9g1343 | 264 | Gene3D | - | 85 | 253 | IPR012677 | - | |
Ahy9g1343 | 264 | SUPERFAMILY | RNA-binding domain, RBD | 124 | 238 | IPR035979 | GO:0003676 | |
Ahy9g1343 | 264 | PANTHER | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED | 183 | 264 | - | - | |
Ahy9g1343 | 264 | PANTHER | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED | 33 | 167 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ahy9g1343 | Ahy-Chr9 | 51032234 | 51035730 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ahy9g1343 | 139 | 248 | Eukaryotic Initiation Factors Gene Family | AT1G22760 | 28.571 | 5.07e-08 | 51.6 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ahy9g1343 | K25079 | - | gmx:100807693 | 372.859 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Ahy19g1658 | 19 | 60178256 | 60182926 | Ahy9g1343 | 9 | 51032234 | 51035730 | hybridization |