Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy9g1258 ATGGATCCTCACCAAGGTCATAACCAAAACCCATCCATGGGAGTTGGTGGCAGCGGAGCACAATTCCCCTATGGTTCCAATCCATACCAGCCCAACCAAATGACTAGCTCACCTGGGATGGTTGTTCCACCAATTGGGACCATTCAATCCACTGGTCAGCCTGCTACAGCTCAATTGGGCCAACATCAACTGGCTTATCAACATATTCATCAACAACAACAGCAGCAACAGCAGATGCAACTTCAGCAACAACTTCAGTCCTTTTGGGCTAACCAATACCAAGAAATTGAGAAGGTAACTGATTTCAAGAACCACAGCCTTCCCCTGGCAAGGATCAAGAAGATCATGAAGGCTGATGAGGATGTCAGGATGATATCGGCCGAAGCGCCGGTCATATTTGCGAGGGCATGCGAAATGTTCATACTGGAGTTGACATTGCGATCATGGAATCACACTGAAGAGAACAAGAGGAGGACTCTTCAAAAGAATGACATTGCTGCTGCAATTACAAGAACCGATATCTTCGATTTCTTGGTTGACATTGTGCCCAGGGAGGATCTGAAAGATGAAGTGCTTACGTCAGTGCCAGGAGGAACAACGGCTGTTCCAGGGCCAGCTGATTCTATTCCTTACTGCTATATGCCGCCACAGCATGCACAAGTTGGAGCTGCAGGAGTCATGATGGGTAATCCTGCAATGGACCCCAATTTATATGCTCAGCAGCCTCATCCCTACATCGCACCGCAAATGTGGCCACAGCCACCAGAGCAACAACAGTCGCCTTCGGATCATTGA 795 0.483 MDPHQGHNQNPSMGVGGSGAQFPYGSNPYQPNQMTSSPGMVVPPIGTIQSTGQPATAQLGQHQLAYQHIHQQQQQQQQMQLQQQLQSFWANQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLTSVPGGTTAVPGPADSIPYCYMPPQHAQVGAAGVMMGNPAMDPNLYAQQPHPYIAPQMWPQPPEQQQSPSDH* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy9g1258 264 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 264 - -
Ahy9g1258 264 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 1 264 - -
Ahy9g1258 264 SUPERFAMILY Histone-fold 76 178 IPR009072 GO:0046982
Ahy9g1258 264 MobiDBLite consensus disorder prediction 1 16 - -
Ahy9g1258 264 MobiDBLite consensus disorder prediction 23 39 - -
Ahy9g1258 264 Gene3D Histone, subunit A 66 184 IPR009072 GO:0046982
Ahy9g1258 264 MobiDBLite consensus disorder prediction 1 39 - -
Ahy9g1258 264 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 106 169 IPR003958 -
Ahy9g1258 264 MobiDBLite consensus disorder prediction 245 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy9g1258 Ahy-Chr9 35397571 35400283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy9g1258 17 263 CCAAT-HAP5 Transcription Factor Family AT1G54830 61.538 8.74e-89 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Ahy9g1258 CBFD_NFYB_HMF 6.00E-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy9g1258 K08066 - gmx:100527803 378.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g1530 19 44089511 44092236 Ahy9g1258 9 35397571 35400283 hybridization
Ahy16g0979 16 17635951 17638534 Ahy9g1258 9 35397571 35400283 PCT
Ahy6g0388 6 4854805 4857372 Ahy9g1258 9 35397571 35400283 PCT
Ahy9g1258 9 35397571 35400283 Ahy16g0979 16 17635951 17638534 PCT
Ahy9g1258 9 35397571 35400283 Ahy6g0388 6 4854805 4857372 PCT