Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy9g1143 ATGGGTCGCATGAACACCAAAGAGAAAGTGCACGATCTCGAGTTGGAAAAAGCTCGCTTGATTAGCTTAGCCCTCGATTTCGGCTTCGACCAACCCTCCGCCACCAAATGCCTCCATCGCCTCATCGACCTCTACGGGGAGGATGGTCGGGATTTCATCACGGTGGAGCACTGCGGCGACGATTTTATTGCGGCGTTGGCGGAGTCGATGGAAGATGCAGAAGAATGGGATGATTTGCAGGGACTGGAATCGGAGGCTTGTGGTGCATTGACTCAGGTGCTTCACAAGACTGGTGTTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGATGATGGTGAGGTTTTCTGCGTTGATGCGACTGATGATTCGCCTTGGCGGCGGAAGCAGAAGGGGAAAGTGGTGGAGTTGGTTTCGAGCGAGGAGGATGAAGATAAGGATGTGGATTTCAGTTTTCTGATGGGAAGAGGGAATTGTGTCACTCCTGCTTCTGCGAAATCAATGGATTGCAGAAGTGGCATCACTCAAGGCTCAATTTCATCCACATCCAGCAAAACAAAATTCTACTCAGCATCAAAGGAAGAAAATAATACTCTTAGCTATGACGAATTGCAGGCTCTAGATGATATTGAATTGGCAAATGTCGTTATCTTTGGTAATAGGGCATTTCGACCATTGCAGCATCAAGCATGCAAAGTAACTTTGGCAAAGCAAGATTCTTTTATCCTTATGCCTACTGGAGGTGGTAAATCTCTATGCTATCAGCTTCCAGCAACCCTTCAACCAGGTGTTACAGTAGTTATATCTCCCTTACTTTCACTCATTCAGGATCAGATAATCACACTAAACCTTAAGTTTGGTATACCTGCTACTTTCTTAAATTCTCAACAAACTGCTTCCCAAGCAGCAGCTGTCCTCCAAGAGCTAAGGAAAGACAAACCATCTTGCAAGCTATTGTATGTGACACCTGAGAGAATTGCTGGCAACCAACCATTTATTGAGATTCTTAAATGCCTGCATCGCAAGGGACAACTTGCAGGTTTTGTTGTTGATGAAGCACACTGTGTTAGCCAATGGGGACATGATTTCCGGCCTGACTATCGCGGATTAGGATCACTTAAGCAAAACTTTCCTCGTGTACCTGTCATGGCATTGACAGCAACTGCAACCCACTCAGTTCGTGAGGACATTTTGAATGCTTTAAGAATCCCCCATGCACTTGTTCTTGAAAGAAGTTTTGACAGACCAAACTTAAAGTATGAAGTGATTGCAAAGACTAAGGAACCGCTGAAGCAGCTGGGACAGCTGCTAGTGGATCGTTTCAGGAATCAATGTGGAATTGTTTACTGCCTCTCGAAAAGTGAATGTGTCGAGGTCTCCAAATTTTTGAATGAGACATGTCAGACTAAAACGGCGTATTACCATGCTGGCATGGCTGCCCGCCAAAGAGTTGCTGTTCAAAGGAAATGGCATGATGGAGAGGTTCATGTTGTCTGTGCAACTATTGCTTTTGGAATGGGGATAGACAAATCTGATGTTCGCTTCGTTGTCCATAATACAATGTCAAAATCAGTTGAAAGTTATTATCAAGAATCAGGAAGGGCCGGAAGAGATAATCTTCCTGCAGTTTGCATTGTATTGTACCAGAAGAAGGATTTCAGCCGAGTAGTATGCATGATAAGAAATGGTCAAGGATATAAAAAGGAGAGCTTTAAGACAGCCATGGATCAAGCGAAAAAGATGCAACAGTACTGTGAACTTAAGGTTGAATGTCGGAGACAAACTTTACTCAAACACTTCGGAGAATCTTTTGACAGAAAAGGCTGCAAGTATGGATCTAATCCATGTGATAACTGTCTCAACACTGCACTATGA 1881 0.446 MGRMNTKEKVHDLELEKARLISLALDFGFDQPSATKCLHRLIDLYGEDGRDFITVEHCGDDFIAALAESMEDAEEWDDLQGLESEACGALTQVLHKTGVGGGGGGGGGGGGGDDGEVFCVDATDDSPWRRKQKGKVVELVSSEEDEDKDVDFSFLMGRGNCVTPASAKSMDCRSGITQGSISSTSSKTKFYSASKEENNTLSYDELQALDDIELANVVIFGNRAFRPLQHQACKVTLAKQDSFILMPTGGGKSLCYQLPATLQPGVTVVISPLLSLIQDQIITLNLKFGIPATFLNSQQTASQAAAVLQELRKDKPSCKLLYVTPERIAGNQPFIEILKCLHRKGQLAGFVVDEAHCVSQWGHDFRPDYRGLGSLKQNFPRVPVMALTATATHSVREDILNALRIPHALVLERSFDRPNLKYEVIAKTKEPLKQLGQLLVDRFRNQCGIVYCLSKSECVEVSKFLNETCQTKTAYYHAGMAARQRVAVQRKWHDGEVHVVCATIAFGMGIDKSDVRFVVHNTMSKSVESYYQESGRAGRDNLPAVCIVLYQKKDFSRVVCMIRNGQGYKKESFKTAMDQAKKMQQYCELKVECRRQTLLKHFGESFDRKGCKYGSNPCDNCLNTAL* 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy9g1143 626 SMART helicmild6 459 541 IPR001650 -
Ahy9g1143 626 CDD SF2_C_RecQ 417 550 - -
Ahy9g1143 626 Pfam Helicase conserved C-terminal domain 434 540 IPR001650 -
Ahy9g1143 626 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 348 357 IPR002464 -
Ahy9g1143 626 Gene3D - 182 416 IPR027417 -
Ahy9g1143 626 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 219 623 IPR004589 GO:0004386|GO:0006310
Ahy9g1143 626 Pfam RecQ zinc-binding 553 622 IPR032284 -
Ahy9g1143 626 PANTHER DNA HELICASE RECQ FAMILY MEMBER 33 624 - -
Ahy9g1143 626 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 233 409 IPR014001 -
Ahy9g1143 626 Gene3D - 417 624 IPR027417 -
Ahy9g1143 626 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 264 562 IPR027417 -
Ahy9g1143 626 SMART ultradead3 221 425 IPR014001 -
Ahy9g1143 626 PANTHER BLOOM SYNDROME PROTEIN 33 624 - -
Ahy9g1143 626 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 431 584 IPR001650 -
Ahy9g1143 626 CDD DEXHc_RecQ 219 416 - -
Ahy9g1143 626 Pfam DEAD/DEAH box helicase 227 395 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy9g1143 Ahy-Chr9 27431477 27436336 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy9g1143 449 539 Eukaryotic Initiation Factors Gene Family AT5G11170 30.769 3.99e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy9g1143 K10899 - gmx:100806070 940.643