Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy9g1104 ATGGATTTCAAGGGTTTCCTAAACGACTTGCAGGATTGGGAACTTTCTCGAAAACACGAAGAAGCTCCACACACGAACAAAAACCCTCAAAAGGAAAATGATTCAGCTTCTCAAAATACTGGATTGGGGTCCTCAAGGCGCGATACTCTTTCTTTTGATAATGCAAGAAGTAACTCTCGACAGTATAATGATCCATTTAGCCGTGTGACTAGTAGTTTTGTTTCCGAAGATATCCCTGACGCCGTGTCCGAGAAAGATCTGGGTAATGAGTATTTCAAGCAGAAAAAATATAAGGAAGCTATAGACTGCTATTCAAGAAGCATTGCCTTCTCGCCTACAGCTGTAGCATATGCAAATAGAGCAATGGCCTATATCAAGCTCAGAAGATTCCAAGAGGCTGAGGATGACTGTACAGAGGCCTTAAATCTCGATGATCGTTACATAAAAGCATACTCACGCCGAGCAACATCTAGAAAAGAACTCGCGAAATTTAAAGAATCCATGGAGGATGCGGAGTTTGCCTTAAGGTTGGAACCTAACAATCAAGAAATTAAGAAACAGCATGCTGATGCCAAGTCTTTGTACGACAAAGCAATGCTTGATAAAGTATCTGGAGCTCTGAAAAGCACTGTAAAGGGCACTCAAAAAGAAGTGAAGTTGGACACAAAAAAGAATGGAGGCAGCATCCATCCCATTTCACATATTACTCAAAAGTCCGGGCCAGCTAAGGGTAATGAGCAGCAAATTCCAGCTAAAGAGTCATACATAATGGAGGAGGTAGATAGTAATAAAATCAGAAGCAGGGCTCAAAGACAAGAGGCAGATGGTTCTAGTTCAAGCAACAACGTCCAGCATGTTAAGAGAAATCAGAAAGGTAGTAAGCAGCACGTGCAAACATCTATTCAACAACTTGCTTCTCGTGCAGCTTCTCTAGCTACGGCTGAAGCTGCAAAGAACATAACACCACCAACTACAGCTTATCAGTTTGAGGTCTCCTGGAGAGGGTTTTCAGGTGATCGTTCTTTGCAGACTTGCCTGTTAAAGGCCATATCTCCTCATGAATTACCAAAAATATTCAAAAATGCCCTCTCTACTGCCTTGCTGATTGACATCATCAAGTGTGTGGCATCTTTTTTCAATGAACAAATGGATCTAGCTGTCAGTTATATGGAGCATTTGACCAAGGTACCAAGATTTGACATGATTGTGATGTGCCTTCCATCAACAGATAAAGATGACTTACGCAAGATCTGGGACGAAGTGTTCTGTGGCGAGGCAACGCCAATGGAGTTTGCGGAGATTCTGGACAACCTGCGATCGAAATACTGCCTTGGGCAGTAG 1341 0.4251 MDFKGFLNDLQDWELSRKHEEAPHTNKNPQKENDSASQNTGLGSSRRDTLSFDNARSNSRQYNDPFSRVTSSFVSEDIPDAVSEKDLGNEYFKQKKYKEAIDCYSRSIAFSPTAVAYANRAMAYIKLRRFQEAEDDCTEALNLDDRYIKAYSRRATSRKELAKFKESMEDAEFALRLEPNNQEIKKQHADAKSLYDKAMLDKVSGALKSTVKGTQKEVKLDTKKNGGSIHPISHITQKSGPAKGNEQQIPAKESYIMEEVDSNKIRSRAQRQEADGSSSSNNVQHVKRNQKGSKQHVQTSIQQLASRAASLATAEAAKNITPPTTAYQFEVSWRGFSGDRSLQTCLLKAISPHELPKIFKNALSTALLIDIIKCVASFFNEQMDLAVSYMEHLTKVPRFDMIVMCLPSTDKDDLRKIWDEVFCGEATPMEFAEILDNLRSKYCLGQ* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy9g1104 446 MobiDBLite consensus disorder prediction 29 63 - -
Ahy9g1104 446 ProSiteProfiles TPR repeat profile. 81 114 IPR019734 GO:0005515
Ahy9g1104 446 Pfam Tetratricopeptide repeat 85 113 IPR001440 GO:0005515
Ahy9g1104 446 Pfam Tetratricopeptide repeat 114 144 IPR001440 GO:0005515
Ahy9g1104 446 MobiDBLite consensus disorder prediction 14 63 - -
Ahy9g1104 446 PANTHER OS05G0129900 PROTEIN 1 445 - -
Ahy9g1104 446 Gene3D Tetratricopeptide repeat domain 70 179 IPR011990 GO:0005515
Ahy9g1104 446 SMART tpr_5 148 181 IPR019734 GO:0005515
Ahy9g1104 446 SMART tpr_5 115 147 IPR019734 GO:0005515
Ahy9g1104 446 SMART tpr_5 81 114 IPR019734 GO:0005515
Ahy9g1104 446 MobiDBLite consensus disorder prediction 211 247 - -
Ahy9g1104 446 ProSiteProfiles TPR repeat profile. 148 181 IPR019734 GO:0005515
Ahy9g1104 446 Pfam Potential Monad-binding region of RPAP3 322 411 IPR025986 -
Ahy9g1104 446 MobiDBLite consensus disorder prediction 229 244 - -
Ahy9g1104 446 MobiDBLite consensus disorder prediction 264 300 - -
Ahy9g1104 446 SUPERFAMILY TPR-like 74 193 IPR011990 GO:0005515
Ahy9g1104 446 MobiDBLite consensus disorder prediction 272 300 - -
Ahy9g1104 446 MobiDBLite consensus disorder prediction 14 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy9g1104 Ahy-Chr9 24598945 24604170 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy9g1104 85 177 U-box Gene Family AT3G07370 31.915 6.80e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy9g1104 K23002 - gmx:100784528 595.89