Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ahy9g1070 | ATGCCGGCAAGAAAGTTCTACTGTGATTACTGCGACAAGCAGTTTCCGGACACGGCGGCCGATCGGAAGCGACATGAGCGAGGTATTCAGCACCAACAAGCCAAAGCTCGCTGGTATGATTCCTTCAAACTTGAACAACAACAGCAGTTTCCTTCTAATGCACCACTACCCCAAGGCATGCCTCAACCTCTTTGCTATAACTTTGTCAACACTGGATTTTGTCGTTATGGTAACTCATGCAAATATCTTCATCCCAATGCCAACAACGCACCACACGCATCAATGATAAGTGCGCCTAATCCGTCAGGAAATGTAGTACTACAAGATAGGACAGGGTTGTCATGGGATAATTTGCCTCCATCACTGCAGCCTCCACCAGAAGCTGGATATCCCTCTCTTCCTTTTGTGGACTGGGGATAG | 420 | 0.4762 | MPARKFYCDYCDKQFPDTAADRKRHERGIQHQQAKARWYDSFKLEQQQQFPSNAPLPQGMPQPLCYNFVNTGFCRYGNSCKYLHPNANNAPHASMISAPNPSGNVVLQDRTGLSWDNLPPSLQPPPEAGYPSLPFVDWG* | 140 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ahy9g1070 | 139 | ProSiteProfiles | Zinc finger C3H1-type profile. | 59 | 87 | IPR000571 | GO:0046872 | |
Ahy9g1070 | 139 | Gene3D | Classic Zinc Finger | 3 | 49 | - | - | |
Ahy9g1070 | 139 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 63 | 85 | IPR000571 | GO:0046872 | |
Ahy9g1070 | 139 | SMART | c3hfinal6 | 60 | 86 | IPR000571 | GO:0046872 | |
Ahy9g1070 | 139 | Gene3D | - | 50 | 111 | - | - | |
Ahy9g1070 | 139 | MobiDBLite | consensus disorder prediction | 91 | 112 | - | - | |
Ahy9g1070 | 139 | SUPERFAMILY | CCCH zinc finger | 62 | 86 | IPR036855 | GO:0046872 | |
Ahy9g1070 | 139 | Pfam | U1 zinc finger | 5 | 39 | IPR013085 | GO:0008270 | |
Ahy9g1070 | 139 | PANTHER | NUCLEASE-RELATED | 1 | 139 | - | - | |
Ahy9g1070 | 139 | SUPERFAMILY | beta-beta-alpha zinc fingers | 4 | 53 | IPR036236 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ahy9g1070 | Ahy-Chr9 | 22516210 | 22518224 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ahy9g1070 | 56 | 90 | C2H2 Transcription Factor Family | AT5G18550 | 45.714 | 9.39e-06 | 42.0 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Ahy9g1070 | zf-U1 | 7.70E-09 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ahy9g1070 | K13152 | - | gmx:100527203 | 175.252 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Ahy19g1352 | 19 | 28815317 | 28817396 | Ahy9g1070 | 9 | 22516210 | 22518224 | hybridization |