Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy9g1008 ATGGCTGAGAAGAAGCTTGAACTCTTTCGTGCTGGGATGAACCCAACCTCCATTTACGCGAATGATTGTTCTTTGGAGCAAATTGTGGTGAAAGAAGGATCATCGTCAAGTATAAGTAGTAGTATCATAACAACGAAGAAGACACCCTCAAAAGAAAAAGATAATAATAAACACGAAGCGGCAGCAGCAGCATCACAATTCTCATACACATCTTTGTATAATTCATCATCGTCAGCAGCAACAACTACTTTCAAGAAACCAAGAATAGCAGACTCATCATTATTAAACCAACAAGACTTTGCAGCAGGAAAGCTCATGAATTTCTCCGCTTTTTTAAGACCTTCAATGCTTAGTCAGAATAATTCTGTTTCACGTGAGGCTGATAACAACAAAGAGGAACCGTTTCCTGAAAAGCAGTTAAAATCTGTTAGTAATAATAATAAGAGGAAAGTGGTGGATAACGGCTTCTGTAACGAACCCTTGATAGAATATTCGTCTGTGTGTTCGCTTGGAGCGTCAACAAACAATACACACATTTATAGCCGGAAACAAGACCTCCATGACTCCACCTACTTAAGCGAGAATGATGAAGACATAGAAGATGTTACGAAGGATATTAAGAATGCTCGGCGGGAGGGCAATAATGGAGTCAGAAGAAGCAGGAATGCTGAGACTCATAATTTATATGAAAGGCAGCGAAGAGACAAGATCAACAAGAAACTGCGCGTACTGAAAGATCTCATACCCAATTGTAATAAGGTAGACAAGGCTTCACTGCTTGATGATGCCATTGAATATCTTAAGGCCTTAAAACTTCATTTACAGATTATGACAATGGGAACCGGGCTATGCATGCCTCCAATGATGCTACCTACATCTTCTCCAACCCAGCAATTACAACAACAGTTAATGGGTTTGAGGCCTGGAATTAACATCCCTTGCAACATGGCTCAGTTCAATAGTATTCCACCACTACCTAATGGAGTTGGCATGTTTGGTTTCCCTAACCAATTCTTACCCGTCATTCCGCCAAATCCAATGTCTCATGCACCTTTCACTACTACTACTACTCATCCCATGCTTGGAAATAATAATAATAATAAGGCTAACAATCTTTGTACACAACCGCCACTACTTCAAACAACCAATAATATCTCAGCTCTAAAGTAG 1170 0.3991 MAEKKLELFRAGMNPTSIYANDCSLEQIVVKEGSSSSISSSIITTKKTPSKEKDNNKHEAAAAASQFSYTSLYNSSSSAATTTFKKPRIADSSLLNQQDFAAGKLMNFSAFLRPSMLSQNNSVSREADNNKEEPFPEKQLKSVSNNNKRKVVDNGFCNEPLIEYSSVCSLGASTNNTHIYSRKQDLHDSTYLSENDEDIEDVTKDIKNARREGNNGVRRSRNAETHNLYERQRRDKINKKLRVLKDLIPNCNKVDKASLLDDAIEYLKALKLHLQIMTMGTGLCMPPMMLPTSSPTQQLQQQLMGLRPGINIPCNMAQFNSIPPLPNGVGMFGFPNQFLPVIPPNPMSHAPFTTTTTHPMLGNNNNNKANNLCTQPPLLQTTNNISALK* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy9g1008 389 Coils Coil 192 212 - -
Ahy9g1008 389 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 219 293 IPR036638 GO:0046983
Ahy9g1008 389 CDD bHLH_AtPIF_like 221 283 - -
Ahy9g1008 389 Gene3D - 212 271 IPR036638 GO:0046983
Ahy9g1008 389 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 221 270 IPR011598 GO:0046983
Ahy9g1008 389 PANTHER TRANSCRIPTION FACTOR PIF3 143 367 IPR044273 GO:0003700|GO:0006355
Ahy9g1008 389 Pfam Helix-loop-helix DNA-binding domain 224 270 IPR011598 GO:0046983
Ahy9g1008 389 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 143 367 - -
Ahy9g1008 389 MobiDBLite consensus disorder prediction 121 142 - -
Ahy9g1008 389 SMART finulus 227 276 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy9g1008 Ahy-Chr9 19903077 19905624 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy9g1008 51 291 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 34.386 9.45e-32 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ahy9g1008 HLH 7.10E-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy9g1008 K12126 - gmx:100818543 206.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g1277 19 25468356 25471204 Ahy9g1008 9 19903077 19905624 hybridization
Ahy16g0799 16 14306517 14308988 Ahy9g1008 9 19903077 19905624 PCT
Ahy6g0543 6 6667948 6670215 Ahy9g1008 9 19903077 19905624 PCT
Ahy9g1008 9 19903077 19905624 Ahy16g0799 16 14306517 14308988 PCT
Ahy9g1008 9 19903077 19905624 Ahy6g0543 6 6667948 6670215 PCT