Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy9g1001 ATGGGTAAAAGAGGGTCTTCCTGTTCCTCTTCCTCTTCATCTTTCTCAACTGCTTCTTCACATCTTCATGATGATCTTAGTCTTGGACTCAGCATTTCTTCCACTCATCATCAACATCTTCCTTCCTCTATCTCAAGGGGGCAGTGGCAAATCCAATCATCATCACTTGCAAGTAGTTCACAAGGTGCTGAATTGGCAAATGATTGTAGTGATCATAACACGTTCTTTGTCAAAGTGTACATGGAAGGCATTCCAATTGGCAGAAAACTCAACCTTTTAGTTCATGATGGCTACCATGAATTGGTTAAAGCTCTTGAACAAATGTTTGACACTACCATACTCTGGGGAACTGAGTTAGATGCAGTGCAAGCAGAGAGGTGTCATGTTCTAACTTATGAGGATGGAGAAGGGGACTTGATTATGGTTGGAGATGTGCCTTGGGAGATGTTCTTATCAGCTGTAAAGAGGTTGAAGATCACCAGGGTTGACACATTTGGATGTTGA 504 0.4206 MGKRGSSCSSSSSSFSTASSHLHDDLSLGLSISSTHHQHLPSSISRGQWQIQSSSLASSSQGAELANDCSDHNTFFVKVYMEGIPIGRKLNLLVHDGYHELVKALEQMFDTTILWGTELDAVQAERCHVLTYEDGEGDLIMVGDVPWEMFLSAVKRLKITRVDTFGC* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy9g1001 167 Pfam AUX/IAA family 59 161 IPR033389 -
Ahy9g1001 167 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 166 IPR003311 GO:0005634|GO:0006355
Ahy9g1001 167 Gene3D - 68 166 - -
Ahy9g1001 167 SUPERFAMILY CAD & PB1 domains 71 159 - -
Ahy9g1001 167 PANTHER AUXIN-INDUCED PROTEIN 6 166 - -
Ahy9g1001 167 ProSiteProfiles PB1 domain profile. 74 164 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy9g1001 Ahy-Chr9 19758239 19760300 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy9g1001 78 159 B3 DNA Binding Superfamily AT4G23980 35.366 8.83e-13 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Ahy9g1001 AUX_IAA 7.10E-29 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy9g1001 K14484 - gmx:100784866 226.483
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g1270 19 25347299 25349137 Ahy9g1001 9 19758239 19760300 hybridization
Ahy16g0798 16 14265040 14265900 Ahy9g1001 9 19758239 19760300 PCT
Ahy6g0544 6 6698133 6698991 Ahy9g1001 9 19758239 19760300 PCT
Ahy9g1001 9 19758239 19760300 Ahy16g0798 16 14265040 14265900 PCT
Ahy9g1001 9 19758239 19760300 Ahy6g0544 6 6698133 6698991 PCT