Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy9g1000 ATGAGTGTATGGGACAAAGCTGATATCATAAAGTGTATAGGACTCAATTGGAGGATTAGTCTTAGCATGAGTGATCCAGATCTTGTTCCACTTCTTATCCAGAGGGTAAAACGCATGAACCTGATTGCTTGTGCTGCTGAGTTAATTGCTGATGGGGATCTAGTGAATGTACAGATTCGAAGATATCGACAGTGGCAGCTCTCTCAAACTAGCTCTGTGGCCTCGTGTATTATTCCTGCTTCATTGTTGCATGGGCAGAGAGAAATACTTGAACAGCTTCTCGGTGGAAAGTTATTGGGAGAGCATAATTTTAACAGGTTTGGCGGGTGGCTTGGAAAGAACTCAATGACAGGCAAAAACCTTAGGCTTATGGAAGATCTGCATGTCCACATGCTTGCTTCACGTGAATCTAGTTCAGGAAGGGATACTATCCGATTGGAATACCTTACCCTTCTCCTTAAACAATTAACAGAACCGCTACGATCTCTGCCCAAGGCTGAAGCTGTTGAGAAAGTTGTGGAATTTATATAG 531 0.4294 MSVWDKADIIKCIGLNWRISLSMSDPDLVPLLIQRVKRMNLIACAAELIADGDLVNVQIRRYRQWQLSQTSSVASCIIPASLLHGQREILEQLLGGKLLGEHNFNRFGGWLGKNSMTGKNLRLMEDLHVHMLASRESSSGRDTIRLEYLTLLLKQLTEPLRSLPKAEAVEKVVEFI* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy9g1000 176 Gene3D - 34 91 - -
Ahy9g1000 176 Pfam Replication factor RFC1 C terminal domain 49 175 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Ahy9g1000 176 PANTHER REPLICATION FACTOR C SUBUNIT 1 14 175 - -
Ahy9g1000 176 SUPERFAMILY post-AAA+ oligomerization domain-like 14 132 IPR008921 GO:0003677|GO:0006260
Ahy9g1000 176 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 14 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy9g1000 Ahy-Chr9 19723632 19726797 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy9g1000 15 176 Core DNA Replication Machinery Family AT5G22010 66.092 5.30e-72 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy9g1000 K10754 - ahf:112710624 331.257